Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002444-TA|BGIBMGA002444-PA|IPR001958|Tetracycline
resistance protein, IPR011701|Major facilitator superfamily MFS_1,
IPR007114|Major facilitator superfamily
(398 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40945-2|AAA81720.1| 445|Caenorhabditis elegans Hypothetical pr... 44 1e-04
AF077539-1|AAK84580.2| 550|Caenorhabditis elegans Hypothetical ... 34 0.15
Z77658-5|CAB01157.2| 392|Caenorhabditis elegans Hypothetical pr... 32 0.82
U40951-4|AAG01568.1| 756|Caenorhabditis elegans Temporarily ass... 32 0.82
U67949-9|AAM69108.1| 486|Caenorhabditis elegans Hypothetical pr... 31 1.1
U67949-8|AAD32274.1| 626|Caenorhabditis elegans Hypothetical pr... 31 1.1
AC024806-2|AAK84613.1| 433|Caenorhabditis elegans Hypothetical ... 31 1.4
AC006774-4|AAF60617.2| 313|Caenorhabditis elegans Serpentine re... 30 2.5
AC006774-3|AAW57825.1| 348|Caenorhabditis elegans Serpentine re... 30 2.5
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 30 3.3
Z50794-1|CAA90655.1| 417|Caenorhabditis elegans Hypothetical pr... 29 4.4
AC006720-3|AAF60447.1| 159|Caenorhabditis elegans Hypothetical ... 29 4.4
Z19153-2|CAA79549.1| 493|Caenorhabditis elegans Hypothetical pr... 29 5.8
U28737-2|AAA68272.1| 455|Caenorhabditis elegans Patterned expre... 29 5.8
Z81487-3|CAB03997.2| 345|Caenorhabditis elegans Hypothetical pr... 29 7.6
Z69384-8|CAM06585.1| 495|Caenorhabditis elegans Hypothetical pr... 29 7.6
Z69384-7|CAA93417.2| 502|Caenorhabditis elegans Hypothetical pr... 29 7.6
AF002196-9|AAV34797.1| 475|Caenorhabditis elegans Hypothetical ... 29 7.6
AF002196-8|AAB53976.2| 586|Caenorhabditis elegans Hypothetical ... 29 7.6
>U40945-2|AAA81720.1| 445|Caenorhabditis elegans Hypothetical
protein F10D7.2 protein.
Length = 445
Score = 44.4 bits (100), Expect = 1e-04
Identities = 75/363 (20%), Positives = 139/363 (38%), Gaps = 30/363 (8%)
Query: 29 GLLGSIYAGFQLGSGPLIGSLSDLKGRRXXXXXXXXXCSVAYTVLGLTXXXXXXXXXXXX 88
G LGS+++ Q S P +GSLSD+ GRR ++Y
Sbjct: 80 GFLGSLFSALQFISSPTLGSLSDIYGRRAVISLCCIMTFISYVNWLKADIFAYFVLSRIL 139
Query: 89 XXXXKQTQMLAKALVPDYENNEQKQAEIYGKMAAIS-GVGITLGPMIGGHIME----DNP 143
K +A A+V D + E + + IS +G +GPMIG + D+P
Sbjct: 140 GGLSKGNINVATAIVSDVYSPEDHPKGM--ALIGISYSLGFLIGPMIGAYFSTIASIDSP 197
Query: 144 ---NGAFMFIAFIVGICFIFNAALVCFLXXXXXXXXXXXXXXXXDVLSENLVLSLFNSFK 200
F I I+ F+F L + + N+ +
Sbjct: 198 FAYPAMFSIILTILEFGFLFFLPETLDLKEQKSLDDIKKTRKELVTPKDLFQFTAVNAPQ 257
Query: 201 QSFVVLYSINWSKYWDIFLYKALVGFAMGVYYSNYALYLKTTYDLSPKYVGYVISFQG-V 259
+ + + W + +FLY L + + +++ +D G V F G +
Sbjct: 258 ERKQEMQKVGWIYFLFLFLYSGL------EFTLPFLTHIR--FDFDNMQQGKVYLFTGLL 309
Query: 260 MGSISSYFIGYINSFYKKDV-DYSLRS-LHVFLLLSISLTGLIVSINVYNYVIWLIPLAM 317
M I + ++ +K V ++ + + +LL++++ T L++ ++ Y I A
Sbjct: 310 MLPIQAKYVRKTPIEKQKAVAEFGIACIIPAYLLVAVAKTPLVLYAGLFFYAI-----AS 364
Query: 318 GNAVSRLVTLEMVLKRSDGDHRGTLIGASNSVRSLSGVVAPMVAGFTGQFLGVS--YVIY 375
V+ L +L V+ +G L G S+ L+ + P+++ LG + Y++
Sbjct: 365 ATVVTSLTSLVHVIYPQ--SEKGVLAGIFRSLGCLARALGPVISSTFFWLLGATTCYIMG 422
Query: 376 ASL 378
A L
Sbjct: 423 AFL 425
>AF077539-1|AAK84580.2| 550|Caenorhabditis elegans Hypothetical
protein T25D3.4 protein.
Length = 550
Score = 34.3 bits (75), Expect = 0.15
Identities = 69/369 (18%), Positives = 140/369 (37%), Gaps = 27/369 (7%)
Query: 2 VDLLAVGLI-IPLVPGHVRKMGANHIYV-GLLGSIYAGFQLGSGPLIGSLSDLKGRRXXX 59
++ A GL+ +P++ N + GL+ + S PL+G+LSD+ GR+
Sbjct: 84 LEYFAWGLLTVPVINVLAETFPTNKFLMNGLVLGVKGLLSFLSAPLVGALSDVWGRKAFL 143
Query: 60 XXXXXXCSVAYTVLGLTXXXXXXXXXXXXXXXXKQTQMLAKALVPDYENNEQKQAEIYGK 119
+ L ++ + +L A V D ++ +++ YG
Sbjct: 144 ILTVLCTCMPIPCLKISPWWYFSLFSLSGLFSVTFSVIL--AYVADI-TDKSERSSAYGL 200
Query: 120 MAAISGVGITLGPMIGGHIMEDNPNGAFMFIAFIVGICFIFNAALVCFLXXXXXXXXXXX 179
++A + P +G +I E + + +A IV + + +V F+
Sbjct: 201 VSATFAASLVTSPALGAYISEVYGDSLVVLLATIVSVADVI--FIVLFVPESLPSRRNTG 258
Query: 180 XXXXXDVLSENLVLSLFNSFKQSFVVLYSINWSKYWDIFLYKALVGFAMGV----YYSNY 235
+S+ +FN I W + L A + F + +S +
Sbjct: 259 S------VSQITPNEVFNWQSADPFGSLRIVWED--KLVLQLATIVFLSYLPESGQFSCF 310
Query: 236 ALYLKTTYDLSPKYVGYVISFQGVMGSISSYFIGYINSFYKK-DVDYSLRSLHVFLLLSI 294
+YLK SP+ V I G++ ++ G+++ + +++ +F L+ +
Sbjct: 311 FVYLKLVVGFSPEAVAMYIGLVGILSVVAQ--TGFLHCLTSRFGTKHTITLGLIFQLIQL 368
Query: 295 SLTGLIVSINVYNYVIWLI-PLAMGNAVSRLVTLEMVLKRSDGDHRGTLIGASNSVRSLS 353
+ GL +++W LA ++++ V SD D +GT+ G +R L
Sbjct: 369 TWYGL----GTQYWMMWSAGVLAAMSSITYPSISAFVSILSDKDKQGTVQGVITGIRGLC 424
Query: 354 GVVAPMVAG 362
P + G
Sbjct: 425 TGFGPALFG 433
>Z77658-5|CAB01157.2| 392|Caenorhabditis elegans Hypothetical
protein F14D7.6 protein.
Length = 392
Score = 31.9 bits (69), Expect = 0.82
Identities = 20/105 (19%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 210 NWSKYWDIFLYKALVGFAMGVYYSNYALYL-KTTYDLSPKYVGYVISFQGVMGSISSYFI 268
+W W + +VG + VYY + YL K ++G++++ + +IS+
Sbjct: 37 DWRSMWISIFLQFVVGIQVSVYYMSMWPYLQKLDKTADVDFLGWIVASCNIGSTISNPIY 96
Query: 269 GYINSFYKKDVDYSLRSLHVFLLLSISLTGLIVSINVYNYVIWLI 313
GY N +K + + + F++ +++ T + ++++ + W +
Sbjct: 97 GYWN---QKTMSVKMPVIIGFMIAALAQTWYGL-LSIFPHAKWFM 137
>U40951-4|AAG01568.1| 756|Caenorhabditis elegans Temporarily
assigned gene nameprotein 130 protein.
Length = 756
Score = 31.9 bits (69), Expect = 0.82
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 11/148 (7%)
Query: 242 TYDLSPKYVGYVISFQGVMGSISSYFIGYINSFYKKDVDYSLRSLHVFLLLSISLTGLIV 301
TY + P + Y +M I +G + + + D + + H F L + L I
Sbjct: 491 TYHVCPNNINYQFD-TALMYVIG--MLGKLKIWSLRHPDMVVSAYHAFGFLGVFLMAAIA 547
Query: 302 SINVYNYVIWLIPLAMGNAVSRLVTLEMVLKRSDGDHRGTLIGASNSVRSLSGV----VA 357
+ V+N + W + + A LV+LE K G L NS+R LS V ++
Sbjct: 548 GVYVHNMIFWALFSIIYIASMLLVSLEFYFK---GIWTLNLRELRNSIR-LSWVSSRHLS 603
Query: 358 PMVAGFTGQFLGVSYVIYASLAPTVLGL 385
+V + +F + + A+ A V GL
Sbjct: 604 CVVPAYKARFFVILLLNIANTAVVVYGL 631
>U67949-9|AAM69108.1| 486|Caenorhabditis elegans Hypothetical
protein F55A4.8b protein.
Length = 486
Score = 31.5 bits (68), Expect = 1.1
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 114 AEIYGKMAAISGVGITLGPMIGGHIMEDNPNGAFMFIAFIVGICFIFNAALVCFL 168
A + G + +G+G T GP+IGG + G F ++GI + + L FL
Sbjct: 214 AFVVGILETFAGLGYTAGPVIGGFFYD---IGGFQLPFLVLGIVLLVASVLAFFL 265
>U67949-8|AAD32274.1| 626|Caenorhabditis elegans Hypothetical
protein F55A4.8a protein.
Length = 626
Score = 31.5 bits (68), Expect = 1.1
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 114 AEIYGKMAAISGVGITLGPMIGGHIMEDNPNGAFMFIAFIVGICFIFNAALVCFL 168
A + G + +G+G T GP+IGG + G F ++GI + + L FL
Sbjct: 354 AFVVGILETFAGLGYTAGPVIGGFFYD---IGGFQLPFLVLGIVLLVASVLAFFL 405
>AC024806-2|AAK84613.1| 433|Caenorhabditis elegans Hypothetical
protein Y52E8A.4 protein.
Length = 433
Score = 31.1 bits (67), Expect = 1.4
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 11/119 (9%)
Query: 187 LSEN-LVLSLFNSFKQSFVVLYSINWSKYWDIFLYKALVGFAMGVYYSNYALYLKTTYDL 245
+S+N +L +F SF +L + + F Y L+ + S Y +K T L
Sbjct: 202 VSQNQAILPFCETFVNSFKLLKTPRMFCFTIFFFYTGLI---RSFWISIYPACIKFTSQL 258
Query: 246 SPKY-----VGYVISFQG-VMGSISSYFIGY-INSFYKKDVDYSLRSLHVFLLLSISLT 297
S +G +++ G V+GS+S IG I F + + LH+FL + ISLT
Sbjct: 259 STNTTAILTIGMIVTGCGQVIGSLSVAVIGNKIRKFGQHTLILCALILHIFLCVMISLT 317
>AC006774-4|AAF60617.2| 313|Caenorhabditis elegans Serpentine
receptor, class t protein42, isoform a protein.
Length = 313
Score = 30.3 bits (65), Expect = 2.5
Identities = 41/195 (21%), Positives = 79/195 (40%), Gaps = 17/195 (8%)
Query: 120 MAAISGVGITLGP-MIGGHIMEDNPNGAFMFIAFIVGICFIFNAALVCFLXXXXXXXXXX 178
+ AI+ +T G MI G + +P +FIA +G+ F +A L+C +
Sbjct: 57 LCAIAVNSVTTGVLMIEGAVYCSHPKT--IFIAGALGLGFWCSACLICLI---------L 105
Query: 179 XXXXXXDVLSENLVLSLFNSFKQSFVVLYSINWSKYWDIFLYKALVGFAMGVYYSNYALY 238
D+L LV F+ + + V+L I + Y+ I L ++ + +Y
Sbjct: 106 VLNRVLDILFPTLVKKYFSGSRTTCVLLIPIAYGLYFTILTPPLLFTSRYQAWFFDPFIY 165
Query: 239 LKTT--YDLSPKYVGYVISFQGVMGSISSYFIGYINSFYKKDVDYSLRSLH--VFLLLSI 294
T Y P + ++ YF I+ ++K ++ + + H +FL ++
Sbjct: 166 QNKTLEYQNYPHTANNLFIVVATC-ALYGYFCAAISKQFRKRLESTNKKSHAQIFLQSTL 224
Query: 295 SLTGLIVSINVYNYV 309
++ VY Y+
Sbjct: 225 ICMANFIAAMVYVYM 239
>AC006774-3|AAW57825.1| 348|Caenorhabditis elegans Serpentine
receptor, class t protein42, isoform b protein.
Length = 348
Score = 30.3 bits (65), Expect = 2.5
Identities = 41/195 (21%), Positives = 79/195 (40%), Gaps = 17/195 (8%)
Query: 120 MAAISGVGITLGP-MIGGHIMEDNPNGAFMFIAFIVGICFIFNAALVCFLXXXXXXXXXX 178
+ AI+ +T G MI G + +P +FIA +G+ F +A L+C +
Sbjct: 84 LCAIAVNSVTTGVLMIEGAVYCSHPKT--IFIAGALGLGFWCSACLICLI---------L 132
Query: 179 XXXXXXDVLSENLVLSLFNSFKQSFVVLYSINWSKYWDIFLYKALVGFAMGVYYSNYALY 238
D+L LV F+ + + V+L I + Y+ I L ++ + +Y
Sbjct: 133 VLNRVLDILFPTLVKKYFSGSRTTCVLLIPIAYGLYFTILTPPLLFTSRYQAWFFDPFIY 192
Query: 239 LKTT--YDLSPKYVGYVISFQGVMGSISSYFIGYINSFYKKDVDYSLRSLH--VFLLLSI 294
T Y P + ++ YF I+ ++K ++ + + H +FL ++
Sbjct: 193 QNKTLEYQNYPHTANNLFIVVATC-ALYGYFCAAISKQFRKRLESTNKKSHAQIFLQSTL 251
Query: 295 SLTGLIVSINVYNYV 309
++ VY Y+
Sbjct: 252 ICMANFIAAMVYVYM 266
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resistance
protein familyprotein 1, isoform c protein.
Length = 1534
Score = 29.9 bits (64), Expect = 3.3
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 191 LVLSLFNSFKQSFVVLYSINWSKYWDIFLYKALVGFAMGVYYSNYALYLK--TTYDLSPK 248
+V+++FN FV++++ W+ FL V F + +Y + + LK + SP
Sbjct: 1096 MVMTIFNVISTVFVIIWATPWAGIG--FLVLGFVYFVVLRFYVSTSRQLKRLESASRSPI 1153
Query: 249 YVGYVISFQGVMGSISSYFIGYINSFYKK 277
Y + S QG SI +Y G ++ F ++
Sbjct: 1154 YSHFQESIQGA-SSIRAY--GVVDKFIRE 1179
>Z50794-1|CAA90655.1| 417|Caenorhabditis elegans Hypothetical
protein F59F5.1 protein.
Length = 417
Score = 29.5 bits (63), Expect = 4.4
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 213 KYWDIFLYKALVGFAMGVYYSNYALYLKTTYDLSPKYVGYVISFQGVMGSIS 264
K+W L A G +G+Y + A +L + P + Y + F ++ +S
Sbjct: 270 KFWQFRLQNAFAGIGIGLYQACLAPFLVAL--VGPSQLAYALGFTNLINGVS 319
>AC006720-3|AAF60447.1| 159|Caenorhabditis elegans Hypothetical
protein Y17G9B.6 protein.
Length = 159
Score = 29.5 bits (63), Expect = 4.4
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 207 YSINWSKYWDIFLYKALVGFAMGVYYSNYALYLKTTYDLSPKYVGYVISFQGVMGSISSY 266
+S +S YW + + A GF+ G S+Y + T Y S + + + S+ S
Sbjct: 37 FSAIFSLYWLLHPFSASTGFSKGP-QSDYRTLISTYYQQSFQQFSFEYCYHSNTPSLVSL 95
Query: 267 FIGYINSF 274
F ++ F
Sbjct: 96 FFSHLQPF 103
>Z19153-2|CAA79549.1| 493|Caenorhabditis elegans Hypothetical
protein C38C10.2 protein.
Length = 493
Score = 29.1 bits (62), Expect = 5.8
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 309 VIWLIPLAMGNAVSRLVTLEMVLKRSD--GDHRGTLIGASNSVRSLSGVVAPMVAGF 363
V+ +I + G A+S L V+ + GT++G N++ +L+G+++P V+ +
Sbjct: 373 VLVIIFITCGMAISGLQYAGFVVNYLEIAPPFSGTVMGTGNTISALAGIISPAVSSY 429
>U28737-2|AAA68272.1| 455|Caenorhabditis elegans Patterned
expression site protein23 protein.
Length = 455
Score = 29.1 bits (62), Expect = 5.8
Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 13/163 (7%)
Query: 231 YYSNYALYLKTTYDLSPKYVGYVISFQGVMGSISSYFIGYINSFY--KKDVDYSLRSLHV 288
+YS +A ++ ++S + VI+ Q V + S GYI+ + +K YSL V
Sbjct: 62 FYSTHAQWITDDTNVSVLWWENVIAIQQVGIFVGSILFGYISDHFGRQKVCQYSLLISSV 121
Query: 289 FLLLSISLTGLIVSINVYNYVIWLIPLAMGNAVSRLVTLEMVLKR--------SDGDHRG 340
LL+ L+ I+ I + ++I A+ VS +T E++ R ++ +R
Sbjct: 122 ILLVEGFLSSTIL-IALCRFIIGTQTGAI-IVVSWSLTTELISPRTRFLARAFANWVYRR 179
Query: 341 TLIGASNSVRSLSGVVAPMVAGFTGQFLGVSYVIYASLAPTVL 383
I +V S + + A FT F + Y+ + +PT L
Sbjct: 180 QFICYGKTVFSAYRISLHVCAAFT-LFGALLYIFFVPESPTYL 221
>Z81487-3|CAB03997.2| 345|Caenorhabditis elegans Hypothetical
protein C54E10.4 protein.
Length = 345
Score = 28.7 bits (61), Expect = 7.6
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 8/43 (18%)
Query: 132 PMIGGHIMEDN------PNGAFMFIAFIVGICFIFNAALVCFL 168
P+ GG+I+E+N + + FI CF+ +AAL CF+
Sbjct: 74 PLAGGYILEENFRRFVSTHASLTIWVFI--FCFVLSAALTCFV 114
>Z69384-8|CAM06585.1| 495|Caenorhabditis elegans Hypothetical
protein T11G6.2b protein.
Length = 495
Score = 28.7 bits (61), Expect = 7.6
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 283 LRSLHVFLLLSISLTGLIVSINVYNYVIWLIPLAMGNAVSRLVTLEMVLKRSDGDHRGTL 342
L S+ VF ++ T S VY++ +W++ +V V + ++ + RG +
Sbjct: 119 LSSIIVFCFGYLTETFHFYSPMVYSF-LWILN-GFIQSVGWPVEVSIMGNWFGHNARGAV 176
Query: 343 IGASNSVRSLSGVVAPMVAGFTGQFLGVSY 372
+GA +S S+ ++ ++A +T FLG Y
Sbjct: 177 MGAWSSCASVGNIIGTLIASYT-LFLGYQY 205
>Z69384-7|CAA93417.2| 502|Caenorhabditis elegans Hypothetical
protein T11G6.2a protein.
Length = 502
Score = 28.7 bits (61), Expect = 7.6
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 283 LRSLHVFLLLSISLTGLIVSINVYNYVIWLIPLAMGNAVSRLVTLEMVLKRSDGDHRGTL 342
L S+ VF ++ T S VY++ +W++ +V V + ++ + RG +
Sbjct: 126 LSSIIVFCFGYLTETFHFYSPMVYSF-LWILN-GFIQSVGWPVEVSIMGNWFGHNARGAV 183
Query: 343 IGASNSVRSLSGVVAPMVAGFTGQFLGVSY 372
+GA +S S+ ++ ++A +T FLG Y
Sbjct: 184 MGAWSSCASVGNIIGTLIASYT-LFLGYQY 212
>AF002196-9|AAV34797.1| 475|Caenorhabditis elegans Hypothetical
protein C09D4.1b protein.
Length = 475
Score = 28.7 bits (61), Expect = 7.6
Identities = 39/183 (21%), Positives = 78/183 (42%), Gaps = 19/183 (10%)
Query: 225 GFAMGVYYSNYALYLKTTYDLSPK------YVGYVISFQGVMGSISSYFIGYINSFYKKD 278
G GV+Y+ L + + P YVG +I G+ GS+ G+I +KK
Sbjct: 272 GINTGVFYAISTLLSQMVLSVYPNETETVGYVGLLIVVAGMAGSVVG---GFILDKFKK- 327
Query: 279 VDYSLRSLHVFLLLSISLTGLIVSINVYNYVIWLIPLA-MGNAVSRLVTL--EMVLKRSD 335
+ L ++ ++L + + ++I++ + V+ I A +G ++ + + E + +
Sbjct: 328 --FKLTTIMIYLFSFVGMLSFTLTIDLDSMVLVFINAALLGFFMTGYLPIGFEFAAEITY 385
Query: 336 GDHRGTLIGASNSVRSLSGVVAPMVAGFTGQFLG--VSYVIYASLAPTVLGLVMSYHYRT 393
GT G N+ + G+ + G G S +I +S V+G +++ R
Sbjct: 386 PAAEGTTSGLLNASAQIFGIALTWLMGIVMHGFGTFTSNIIMSSC--LVVGTILTCFIRE 443
Query: 394 KRK 396
K
Sbjct: 444 DLK 446
>AF002196-8|AAB53976.2| 586|Caenorhabditis elegans Hypothetical
protein C09D4.1a protein.
Length = 586
Score = 28.7 bits (61), Expect = 7.6
Identities = 39/183 (21%), Positives = 78/183 (42%), Gaps = 19/183 (10%)
Query: 225 GFAMGVYYSNYALYLKTTYDLSPK------YVGYVISFQGVMGSISSYFIGYINSFYKKD 278
G GV+Y+ L + + P YVG +I G+ GS+ G+I +KK
Sbjct: 383 GINTGVFYAISTLLSQMVLSVYPNETETVGYVGLLIVVAGMAGSVVG---GFILDKFKK- 438
Query: 279 VDYSLRSLHVFLLLSISLTGLIVSINVYNYVIWLIPLA-MGNAVSRLVTL--EMVLKRSD 335
+ L ++ ++L + + ++I++ + V+ I A +G ++ + + E + +
Sbjct: 439 --FKLTTIMIYLFSFVGMLSFTLTIDLDSMVLVFINAALLGFFMTGYLPIGFEFAAEITY 496
Query: 336 GDHRGTLIGASNSVRSLSGVVAPMVAGFTGQFLG--VSYVIYASLAPTVLGLVMSYHYRT 393
GT G N+ + G+ + G G S +I +S V+G +++ R
Sbjct: 497 PAAEGTTSGLLNASAQIFGIALTWLMGIVMHGFGTFTSNIIMSSC--LVVGTILTCFIRE 554
Query: 394 KRK 396
K
Sbjct: 555 DLK 557
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.325 0.142 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,171,644
Number of Sequences: 27539
Number of extensions: 306878
Number of successful extensions: 1002
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 992
Number of HSP's gapped (non-prelim): 25
length of query: 398
length of database: 12,573,161
effective HSP length: 83
effective length of query: 315
effective length of database: 10,287,424
effective search space: 3240538560
effective search space used: 3240538560
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)
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