GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002444-TA|BGIBMGA002444-PA|IPR001958|Tetracycline
resistance protein, IPR011701|Major facilitator superfamily MFS_1,
IPR007114|Major facilitator superfamily
         (398 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   4.6  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 300 IVSINVYNYVIWLIPLAMGNAVSRLVTLEM 329
           I SI V +Y IW+  + M +  S  + LEM
Sbjct: 105 INSIRVKSYEIWVPDIVMHSVTSVGIDLEM 134


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 213 KYWDIFLYKALVGFAMGVYYSNYALY 238
           +Y   F  K    FA G YYS Y+L+
Sbjct: 416 RYQPAFRCKPSQRFASGRYYSAYSLH 441


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.142    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,963
Number of Sequences: 429
Number of extensions: 4007
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 2
length of query: 398
length of database: 140,377
effective HSP length: 59
effective length of query: 339
effective length of database: 115,066
effective search space: 39007374
effective search space used: 39007374
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)