GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002443-TA|BGIBMGA002443-PA|IPR001611|Leucine-rich repeat
         (204 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    31   0.005
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   1.7  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    23   2.3  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   4.0  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    21   5.2  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   5.2  
AF264718-1|AAF75271.1|  125|Tribolium castaneum putative cytochr...    21   9.1  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 31.5 bits (68), Expect = 0.005
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 9   LDLSYNSIETLKGLEQFAR---LEELILDNNQLS--DGIKFPKLPYLKTLSLNNNQIANL 63
           LDLS+NSI +L    Q AR   L  L L  N+L   D   F  +P L +L+L +N    L
Sbjct: 374 LDLSWNSISSLSHGGQLARFKCLSWLDLSYNRLGQIDAGTFKGIPRLASLNLGHNSQLTL 433

Query: 64  E 64
           E
Sbjct: 434 E 434



 Score = 24.6 bits (51), Expect = 0.56
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 8/98 (8%)

Query: 9   LDLSYNSIETL--KGLEQFARLE--ELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANLE 64
           LDL+YNSI +L     +Q   L    + + +N+L + +  P +P+ +   L   Q   + 
Sbjct: 169 LDLAYNSISSLDFNIFDQVGSLGMFHVNMSHNKLINLVVAPSVPFEQDTGLGGLQNIKVL 228

Query: 65  DL----VDKIRENFPVLSYLSLLSNKACPNQLSDVDKD 98
           DL    +  + + F     LSL+      N+L +  KD
Sbjct: 229 DLSFNNITSVAKQFFRPVELSLMQLYLGHNKLLNATKD 266



 Score = 23.0 bits (47), Expect = 1.7
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 27 RLEELILDNNQLSD--GIKFPKLPYLKTLSLNNNQI 60
          RLEEL L NN+L +     F  L  LK + L +N I
Sbjct: 43 RLEELDLSNNRLRNVPDNSFHFLRSLKKVHLQDNTI 78


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 90  NQLSDVDKDDSDYQRYRYYVIYKIPH 115
           ++  D  K+ +D+Q Y  Y  YK+ H
Sbjct: 414 DEWDDTLKEKADFQYYVSYDFYKMNH 439


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 69  KIRENFPVLSYLSLLSNKACPNQLSDVDKDDSD 101
           K + +F V S LS   ++   ++LSD D DD +
Sbjct: 9   KSKISFSVESLLSKKEDEEVEHRLSDRDDDDEN 41



 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 148 PDAGPSIASPVVAAGGQRP 166
           P   P + SP +AA   RP
Sbjct: 197 PGGAPPLVSPFLAAMAHRP 215


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
          protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 46 KLPYLKTLSLNNNQIAN 62
          +LP LK+  LNNN + +
Sbjct: 79 ELPALKSRKLNNNNVVS 95


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 6/13 (46%), Positives = 11/13 (84%)

Query: 63  LEDLVDKIRENFP 75
           ++DL+  I++NFP
Sbjct: 305 IQDLISTIKDNFP 317


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 6/13 (46%), Positives = 11/13 (84%)

Query: 63  LEDLVDKIRENFP 75
           ++DL+  I++NFP
Sbjct: 305 IQDLISTIKDNFP 317


>AF264718-1|AAF75271.1|  125|Tribolium castaneum putative
          cytochrome P450 monooxigenaseCYP4Q6 protein.
          Length = 125

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)

Query: 60 IANLEDLVDKIRE 72
          +ANL+D+  K+RE
Sbjct: 12 LANLQDIQTKVRE 24


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.139    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,942
Number of Sequences: 317
Number of extensions: 1879
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 204
length of database: 114,650
effective HSP length: 54
effective length of query: 150
effective length of database: 97,532
effective search space: 14629800
effective search space used: 14629800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)