Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002443-TA|BGIBMGA002443-PA|IPR001611|Leucine-rich repeat
(204 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo... 45 9e-06
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 40 3e-04
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 36 0.006
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 32 0.052
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 32 0.068
SPBC216.06c |swi1||replication fork protection complex subunit S... 30 0.21
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 29 0.48
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 29 0.64
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 28 1.1
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce... 27 1.5
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.9
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb... 27 1.9
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 2.6
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 26 3.4
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 26 3.4
SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|c... 26 4.5
SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of RNA-me... 25 7.8
SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyce... 25 7.8
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 7.8
>SPBC1861.08c |||U2 snRNP-associated protein Lea1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 44.8 bits (101), Expect = 9e-06
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 11/123 (8%)
Query: 9 LDLSYNSIETLKGLEQFARLEELI-LDNNQLSDGIKFPKLPYLKTLSLNNNQIANLEDLV 67
LDL + I ++ L + + I +N + FP++ L+TL NN+I + +
Sbjct: 23 LDLRWYQIPIIENLGVLRDVHDAIDFTDNDIRYLGNFPRMKRLQTLLCGNNRITAIAPDI 82
Query: 68 DKIRENFPVLS----YLSLLSN----KACPN--QLSDVDKDDSDYQRYRYYVIYKIPHLR 117
K+ N LS +L +++ +CP LS +D + Q YR Y+I++IP L
Sbjct: 83 GKVLPNLKTLSLAQNHLQEIADLDPLASCPQLTNLSCIDNPVAQKQYYRLYLIWRIPSLH 142
Query: 118 FLD 120
LD
Sbjct: 143 ILD 145
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 39.5 bits (88), Expect = 3e-04
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 9 LDLSYNSIETLKGLEQFARLEELILDNNQL--SDGIKFPKLPYLKTLSLNNNQIANL 63
LD+SYN +E L GL L EL +D+N L DGI+ L L LS NN+I L
Sbjct: 673 LDISYNQLEDLTGLSSLIHLRELKVDSNHLWSLDGIQ--HLDGLLKLSACNNRIKEL 727
Score = 35.5 bits (78), Expect = 0.006
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 27 RLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANLE 64
RLEEL+L NN++ + + L L L L+NN++ NL+
Sbjct: 736 RLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLTNLK 773
Score = 32.3 bits (70), Expect = 0.052
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 11 LSYNSIETLKGLEQFARLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANLE 64
L N IE ++ + L L LDNN+L++ + +L+ L ++NN I LE
Sbjct: 742 LGNNEIEEIEEISSLQNLMVLQLDNNKLTNLKASQPMIHLRILRISNNAIHQLE 795
Score = 25.0 bits (52), Expect = 7.8
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 28 LEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANLEDLVDKIRENFPVLSYLSLLSNKA 87
L L L +N +SD L + L L N+I + +L D I N L+ L L N
Sbjct: 893 LRVLDLSHNYISDIESLKPLQMIHRLYLVGNRIKKMRNLCD-ILANLKQLNVLDLRMNPL 951
Query: 88 CPNQLSDVDKDDSDYQ 103
N + DDS Y+
Sbjct: 952 NFNIYPVI--DDSIYE 965
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 35.5 bits (78), Expect = 0.006
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 9 LDLSYNSIETLKGLEQFARLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANLEDL 66
LDLS+N+I+T++ + LE L N++ L L L L N+I +E+L
Sbjct: 109 LDLSFNNIKTIRNINHLKGLENLFFVQNRIRRIENLEGLDRLTNLELGGNKIRVIENL 166
Score = 34.7 bits (76), Expect = 0.010
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 6 VKCLDLSYNSIETLK--GLEQFARLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANL 63
V C++L + I+++ GLE+F L+ L L NQ+ P+ L L L +N I +
Sbjct: 40 VDCVELIQSRIQSMASLGLERFKNLQSLCLRQNQIKKIESVPET--LTELDLYDNLIVRI 97
Query: 64 EDLVDKIRENFPVLSYLSLLSN 85
E+L +N L+YL L N
Sbjct: 98 ENL-----DNVKNLTYLDLSFN 114
Score = 32.3 bits (70), Expect = 0.052
Identities = 16/62 (25%), Positives = 33/62 (53%)
Query: 9 LDLSYNSIETLKGLEQFARLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANLEDLVD 68
L +S+N + + G+E LE L + NN + L L L +NN++++ +++ D
Sbjct: 220 LYVSHNGLTSFSGIEVLENLEILDVSNNMIKHLSYLAGLKNLVELWASNNELSSFQEIED 279
Query: 69 KI 70
++
Sbjct: 280 EL 281
Score = 25.0 bits (52), Expect = 7.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 6 VKCLDLSYNSIETLKGLEQFARLEELILDNNQLS 39
++ LD+S N I+ L L L EL NN+LS
Sbjct: 239 LEILDVSNNMIKHLSYLAGLKNLVELWASNNELS 272
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 32.3 bits (70), Expect = 0.052
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 11 LSYNSIETLKGLE-QFARLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANLEDLVDK 69
LS N + +L E +EEL L +N+L + F L Y K L + N L ++ K
Sbjct: 790 LSGNPVSSLSSQEFVMPTVEELYLVDNRLGNDC-FTALEYFKCLKVLNLSYNYLTEIPSK 848
Query: 70 IRENFPVLSYLSLLSNK 86
+NF L +L + N+
Sbjct: 849 FFQNFSDLKHLFVSGNE 865
Score = 25.8 bits (54), Expect = 4.5
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 28 LEELILDNNQLSDGIKFPKLPY-LKTLSLNNNQIANL--EDLVDKIRENFPVLSYLSLLS 84
LE L + N+LS K L L+ L ++ N + NL E K P L YL+L
Sbjct: 879 LETLYANGNRLSSFPKNEALSKSLRFLDISTNNLQNLAVEKAEKKSLTKLPQLEYLNLSG 938
Query: 85 N 85
N
Sbjct: 939 N 939
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 31.9 bits (69), Expect = 0.068
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 12 SYNSIETLKGLEQFA-RLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANLEDLVDKI 70
+++ +E + GL+ + E+ LD + + K+P L L LN N+ + +D+VD+I
Sbjct: 267 AFSKLENI-GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEI 325
Query: 71 RENF 74
RE F
Sbjct: 326 REVF 329
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 30.3 bits (65), Expect = 0.21
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 76 VLSYLSLLSNKACPNQLSDVDKDDSDYQRYR 106
+LS L L++N CP LSD DKD ++Y+ +R
Sbjct: 58 LLSSLQLVTNDICPI-LSDWDKDITNYRNWR 87
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 29.1 bits (62), Expect = 0.48
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 73 NFPVLSYLSLLSNKACPNQLSDVDKDDSD-YQRYRYYVIYKI 113
NF +S+L +L N P+ + + + ++D + R+ Y V+Y I
Sbjct: 1115 NFSTMSFLEILFNSQLPSFIFSMTQREADNFGRFLYEVLYDI 1156
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 28.7 bits (61), Expect = 0.64
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 48 PYLKTLSLNNNQIANLEDLVD-KIRENFPVLSYLSLLSNKACPNQLSDVDKDDSDYQRYR 106
P L LSL NN+I +L DL + P L L L+ N ++ DYQR
Sbjct: 240 PKLLNLSLANNRITSLSDLDPWSPKTKLPELQELVLVGNPI----VTTFANRAMDYQR-- 293
Query: 107 YYVIYKIPHLRFLD 120
++ + P LR LD
Sbjct: 294 -EMVSRFPKLRLLD 306
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 45 PKLPYLKTLSLNNNQIANLEDLVDKIRENFPVLSYLSLLSN 85
PK K + +Q A+ +D+++K++ + P+L YL+ N
Sbjct: 121 PKFQEFKVQRESYSQTASNDDVIEKLQTSTPLLQYLAEKKN 161
>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 498
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 77 LSYLSLLSNKACPNQLSDVDKDDSDYQRYR 106
++Y+ LSN P+ +SD D DD D +R
Sbjct: 407 VNYIQPLSNANGPSAVSDSDDDDDDPNDFR 436
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 27.1 bits (57), Expect = 1.9
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 9 LDLSYNSIETLKGLEQFARLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANLEDLVD 68
++L+ S ETL L+ + +L + D KF P ++ +L +A +DLV
Sbjct: 346 MNLAKQSNETL--LQTLTEQTDQLLSFKETMDSFKFILGPSMENQALQQGILAEQQDLVA 403
Query: 69 KIRE 72
++R+
Sbjct: 404 QLRD 407
>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 73 NFPVLSYLSLLSNKACPNQLSDVDKDDSDYQRYRYYVIYKIPHLRFLDS 121
N P + + S+ A + LS + D +Q+Y +Y + P+L F+D+
Sbjct: 169 NLPSIICPTTASSDAATSSLSVIYTPDGQFQKYSFYPLN--PNLIFIDT 215
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.6 bits (56), Expect = 2.6
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 10 DLSYNSIET-LKGLEQFARLEELILDNNQLSDGIKFPKLPYLKT-LSLNNNQIAN 62
DLS +ET LKG E ++ ++ I DN++ P++ ++T S+ N I N
Sbjct: 155 DLSKEDLETTLKGDENYSSSQKEIYDNDETIPKPPSPEVEKIETSTSVENAYITN 209
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 56 NNNQIANLEDLVDKIRENFPVLSYLSLLSNKACPNQLSDVDKDDSDYQ 103
NN+ I + E ++++ +EN ++ L + + SD+ + +SD Q
Sbjct: 402 NNSMIRDSESIINERKENIGLIGVKRSLHDSTTSHNKSDLMRTNSDPQ 449
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 26.2 bits (55), Expect = 3.4
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 144 PPDVPDAGPSIASPVVAAGG--QRPLPIDLSAVGK--HKGAYGKCLY 186
P VP AGP+ A V A G +R DL+AV + K G+ LY
Sbjct: 548 PGSVPSAGPAEAEAVPAVPGMPERFTAADLAAVPEESRKQVLGELLY 594
>SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 4.5
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 26 ARLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANLEDLVDKIRENFPVLSYLSLLSN 85
A E L+L +NQ S K ++ + L NN +A+ L + + L Y+SL+ N
Sbjct: 67 ALFERLLLSSNQKSTS-KSNQM-----IKLLNNSLAHNNGLPSQRCNHDSKLVYMSLVQN 120
Query: 86 KACPNQLSD 94
P Q S+
Sbjct: 121 NGLPGQRSN 129
>SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of
RNA-mediated gene silencing |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 296
Score = 25.0 bits (52), Expect = 7.8
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 23 EQFARLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANLED 65
E A L EL +D + D KLPY K L + I+ +E+
Sbjct: 102 ECLAGLVELTIDGEKDEDTWISFKLPYYKILQTSETAISEVEN 144
>SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 138
Score = 25.0 bits (52), Expect = 7.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 89 PNQLSDVDKDDSDYQRYRYYVIYKIPHLRFLDS 121
PN++S +D D DY+ R +IP FL S
Sbjct: 20 PNEISIIDVRDYDYEGERIPGSVRIPSDTFLAS 52
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.0 bits (52), Expect = 7.8
Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 45 PKLPYLKTLSLNNNQIA-NLEDLVDKIRENFPVLSYLSLLSNKACPNQLSDVDKDDSDYQ 103
P +P L+ + + ++ NLE+ + ++E FP + +S K N ++ + + ++
Sbjct: 1664 PMIPNNTELNEDTSAVSRNLENATNDLKETFPTTTTISTARAKPGNNDINTILRRNNSRG 1723
Query: 104 RYR 106
R R
Sbjct: 1724 RRR 1726
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.139 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 958,243
Number of Sequences: 5004
Number of extensions: 38631
Number of successful extensions: 132
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 108
Number of HSP's gapped (non-prelim): 32
length of query: 204
length of database: 2,362,478
effective HSP length: 70
effective length of query: 134
effective length of database: 2,012,198
effective search space: 269634532
effective search space used: 269634532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)
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