GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002443-TA|BGIBMGA002443-PA|IPR001611|Leucine-rich repeat
         (204 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.095
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 27.5 bits (58), Expect = 0.095
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 5/59 (8%)

Query: 6   VKCLDLSYNSIETLK--GLEQFARLEELILDNNQLSD--GIKFPKLPYLKTLSLNNNQI 60
           ++ L+L+ N ++ ++    E+  RLE + LD N LSD  G+ F  +  L  L+L+ N I
Sbjct: 504 LQILNLARNKVQHVERYAFERNMRLEAIRLDGNFLSDINGV-FTSIASLLLLNLSENHI 561



 Score = 27.1 bits (57), Expect = 0.13
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 7/59 (11%)

Query: 9   LDLSYNSIETLKGL--EQFARLEELILDNNQLS---DGIKFPKLPYLKTLSLNNNQIAN 62
           L LS N+I ++  L     + L+EL L  N+L+   D ++   L  LKTL L  N+I+N
Sbjct: 412 LTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVPDALR--DLALLKTLDLGENRISN 468



 Score = 27.1 bits (57), Expect = 0.13
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 4   AKVKCLDLSYNSIETLKGLEQFARLEELILDNNQLS 39
           +KVK LD S+N I  L  L     +E L ++NN ++
Sbjct: 595 SKVKTLDASHNRITELSPLSVPDSVELLFINNNYIN 630


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 20  KGLEQFARLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANLEDLVDKIRENFPVLSY 79
           +GLE    L E+I D + + D  KF  +  +KT+       + + +  +   E+ P   +
Sbjct: 809 QGLECLRFLNEVISDFDAILDQNKFKDIIKIKTIGSTYMAASGITESAES--EDGPRWGH 866

Query: 80  LSLL 83
           LS L
Sbjct: 867 LSTL 870


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.139    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,047
Number of Sequences: 429
Number of extensions: 2765
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 204
length of database: 140,377
effective HSP length: 55
effective length of query: 149
effective length of database: 116,782
effective search space: 17400518
effective search space used: 17400518
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)