GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002442-TA|BGIBMGA002442-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (189 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    26   4.0  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   5.3  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    25   5.3  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    25   7.0  
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...    25   7.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.3  

>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 16  VVNFSQAVSVLVSAYTLLAISIDR 39
           +VNFS+AVS L     +LA S+DR
Sbjct: 853 MVNFSEAVSNLGLVAGILATSVDR 876


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 2/24 (8%)

Query: 79  KLERPAEWHKYCQL-DICHEEWDH 101
           K E+PA   K+C+L +IC E++DH
Sbjct: 164 KFEKPAR-SKHCRLCNICVEKFDH 186


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 92  LDICHEEWDHVEQSERYTC 110
           L  CH  +DH++ S  Y C
Sbjct: 222 LQACHAAYDHIDVSAIYNC 240


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 2/71 (2%)

Query: 7   WPFGGIMCKVVNFSQAVSVLVSAYTLLAISIDRYMAIMRPLKPRMGKTAAKMVVAGVWGG 66
           WPF  + CK +  S+   +L S   LL      +      ++P  G       V+  W  
Sbjct: 80  WPFHKLECKALQASKQNGILPSVCRLLIRLYLLWQKNPAIIEPMEGHQNEFQAVSSSWSD 139

Query: 67  A--IATATPIY 75
           A  IA+A   Y
Sbjct: 140 AELIASAASHY 150


>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 32  LLAISIDRYMAIMRPLKPRMGKTAAK 57
           LL I  DR+  +   LKPR+ +TA K
Sbjct: 311 LLGIVCDRFGNVYYTLKPRVTRTALK 336


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)

Query: 111  ALLVLQFVLPLSALVCTYARIAHVVW 136
            ++LV  FVLP+ +L  + ++IA  +W
Sbjct: 2396 SMLVSDFVLPVLSLQFSNSKIAEYLW 2421


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.136    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 744,717
Number of Sequences: 5004
Number of extensions: 25311
Number of successful extensions: 55
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 6
length of query: 189
length of database: 2,362,478
effective HSP length: 69
effective length of query: 120
effective length of database: 2,017,202
effective search space: 242064240
effective search space used: 242064240
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 51 (24.6 bits)