GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002442-TA|BGIBMGA002442-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (189 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0187 + 1572014-1572180,1572266-1572422,1573047-1573097,157...    29   1.8  
12_02_0271 + 16629099-16630325                                         29   2.3  
05_01_0552 + 4837392-4837910                                           28   4.1  
02_01_0391 + 2838471-2838794,2838892-2839028,2841155-2841631,284...    28   5.4  
09_06_0280 + 22010270-22011407,22011890-22013097                       27   9.5  
01_06_1697 - 39260157-39260160,39260232-39260313,39260339-392604...    27   9.5  

>08_01_0187 +
           1572014-1572180,1572266-1572422,1573047-1573097,
           1573371-1573463,1573595-1573681
          Length = 184

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 41  MAIMRPLKPRMGKTAAKMVVAGVWGGAIATAT 72
           +A  RPL+  +G T A++   GV G A+AT T
Sbjct: 140 LAETRPLRELLGHTPAQVFAGGVLGFAVATFT 171


>12_02_0271 + 16629099-16630325
          Length = 408

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 65  GGAIATATPIYVVSK---LERPAEWHKYCQL--DICHEEWDHVEQSERYTCALLVLQFVL 119
           GG +     +Y +S+   + RP ++  +  +  D+ H  W  +     + C L  L+F+ 
Sbjct: 142 GGGVVGGGTLYALSRTPAVVRPLDFEPWFFVLDDLSHTVWRELPSPPLFPCRLNPLEFLD 201

Query: 120 PLSALVCTYARI-AHVV 135
           P    V  YA + +H++
Sbjct: 202 PPKLRVAAYALVGSHIL 218


>05_01_0552 + 4837392-4837910
          Length = 172

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query: 56  AKMVVAGVWGGAIATATPIYVVSKLERPAEWHKYCQLDICHEE 98
           A  + A VWG     A   + +  + RPA    Y +LD C  E
Sbjct: 120 APAMKAAVWGMTSTVAVAGFYLLFVHRPAAISSYSELDTCKHE 162


>02_01_0391 +
           2838471-2838794,2838892-2839028,2841155-2841631,
           2841719-2841999,2843009-2843051,2844094-2844148,
           2845771-2845824,2846282-2846314,2846574-2846621,
           2846885-2846950,2847286-2847426
          Length = 552

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 111 ALLVLQFVLPLSALVCTYARIAHVVWGGRPPGEAESTRDSRMQ 153
           A  V+Q++  L+A      +I  + WG + P +A++ RDS  Q
Sbjct: 456 AWAVVQYMNDLNAAFKGNKQIGVIGWGSQGPAQAQNLRDSIAQ 498


>09_06_0280 + 22010270-22011407,22011890-22013097
          Length = 781

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/17 (64%), Positives = 12/17 (70%)

Query: 62  GVWGGAIATATPIYVVS 78
           G WGG  AT+T  YVVS
Sbjct: 121 GTWGGVAATSTNPYVVS 137


>01_06_1697 -
           39260157-39260160,39260232-39260313,39260339-39260405,
           39260721-39260813,39260984-39261034,39261481-39261637,
           39262375-39262511
          Length = 196

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 45  RPLKPRMGKTAAKMVVAGVWGGAIATATPIYVV 77
           RPL+  +G T  ++V   + G  +ATA  +++V
Sbjct: 134 RPLRELLGHTPTQVVAGALLGSMLATAGQMFLV 166


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.136    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,150,263
Number of Sequences: 37544
Number of extensions: 186179
Number of successful extensions: 497
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 492
Number of HSP's gapped (non-prelim): 6
length of query: 189
length of database: 14,793,348
effective HSP length: 78
effective length of query: 111
effective length of database: 11,864,916
effective search space: 1317005676
effective search space used: 1317005676
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 57 (27.1 bits)