GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002441-TA|BGIBMGA002441-PA|undefined
         (90 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    25   0.12 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   0.50 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   0.50 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   0.50 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   0.50 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   0.50 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   0.50 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   0.50 
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    23   0.50 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   0.50 
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    19   6.2  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 25.0 bits (52), Expect = 0.12
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 38   TLQPDIPITVEAREADDTYEAETSGDVT---GSSGLRPPVLT 76
            T+ P   +  +    DDT+      DVT    + GL PPV+T
Sbjct: 1298 TVSPSASVPAKIASFDDTFTTTYKEDVTLPCLAVGLPPPVIT 1339


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 0.50
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 60  TSGDVTGSSGLRPPVLTAVSPP 81
           ++ + T SSGL  P+  + SPP
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPP 154


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 0.50
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 60  TSGDVTGSSGLRPPVLTAVSPP 81
           ++ + T SSGL  P+  + SPP
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPP 154


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 23.0 bits (47), Expect = 0.50
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 60  TSGDVTGSSGLRPPVLTAVSPP 81
           ++ + T SSGL  P+  + SPP
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPP 154


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 0.50
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 60  TSGDVTGSSGLRPPVLTAVSPP 81
           ++ + T SSGL  P+  + SPP
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPP 154


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 23.0 bits (47), Expect = 0.50
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 60  TSGDVTGSSGLRPPVLTAVSPP 81
           ++ + T SSGL  P+  + SPP
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPP 154


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 23.0 bits (47), Expect = 0.50
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 60  TSGDVTGSSGLRPPVLTAVSPP 81
           ++ + T SSGL  P+  + SPP
Sbjct: 89  SNSNATKSSGLTSPLSVSTSPP 110


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 0.50
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 60  TSGDVTGSSGLRPPVLTAVSPP 81
           ++ + T SSGL  P+  + SPP
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPP 154


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 23.0 bits (47), Expect = 0.50
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 60  TSGDVTGSSGLRPPVLTAVSPP 81
           ++ + T SSGL  P+  + SPP
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPP 154


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 0.50
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 60  TSGDVTGSSGLRPPVLTAVSPP 81
           ++ + T SSGL  P+  + SPP
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPP 154


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
          protein.
          Length = 126

 Score = 19.4 bits (38), Expect = 6.2
 Identities = 8/13 (61%), Positives = 8/13 (61%)

Query: 70 LRPPVLTAVSPPP 82
          L PP   A SPPP
Sbjct: 19 LTPPHNPAYSPPP 31


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.127    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,753
Number of Sequences: 317
Number of extensions: 698
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 90
length of database: 114,650
effective HSP length: 47
effective length of query: 43
effective length of database: 99,751
effective search space:  4289293
effective search space used:  4289293
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.6 bits)
S2: 37 (19.0 bits)