GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002441-TA|BGIBMGA002441-PA|undefined
         (90 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   1.3  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    25   2.3  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   2.3  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    24   4.0  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    24   4.0  
SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subun...    23   5.3  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    23   5.3  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    23   5.3  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    23   9.2  
SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding...    23   9.2  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    23   9.2  

>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 8   PSHSAPTTRWPVAVEQLINKVDTEISRIATTLQPDIPITVEAREADDTYEAETSGDVTGS 67
           P+ S  +  +P +     +      S +A+TL+P          +  +    TS  +  +
Sbjct: 378 PNPSVASPAFPNSSTSNPSTAPASASPLASTLKPSTANDTNGSSSSSSSNPRTSSPLASN 437

Query: 68  SGLRPPVLTAVSPPPL 83
           +  +PPV    SPP L
Sbjct: 438 AENKPPV-AQQSPPVL 452


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 33  SRIATTLQPDIP-ITVEAREADDTYEAETSGDVTGSSGLRPPVLTAVSPP 81
           SR A+ L+P I  +     + D T+E   +GDV     L    +  V PP
Sbjct: 190 SRPASLLKPGITNLYTLIVKPDQTFEVRINGDVVRQGSLFYDFIPPVLPP 239


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
          Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 46 TVEAREADDTYEAETSGDVTGSSGLRPPVLTAVSPPP 82
          TV  +  D  ++  TS D T S    P    ++ PPP
Sbjct: 36 TVLGKGKDSNHDRRTSTDTTHSRHRYPETPPSLPPPP 72


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 1692

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 25 INKVDTEISRIATTLQPDIPITVEAREADDTYEA-ETSGDVTGSSGLRP 72
          ++ +D +    AT++  DIP   EA   +D++EA        G+SG RP
Sbjct: 26 LDDLDEKDDDSATSVNYDIPEITEANLCNDSHEALSPCTQPVGNSG-RP 73


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 9   SHSAPTTRWPVAVEQLINKVDTEISRIATTLQPDIPITVEAREADDTYEAETSGDVTGSS 68
           SH+ P   + + ++     + T +S + T        TVE    DD  E+ + G+    S
Sbjct: 603 SHNPPYFDYQIRLKSYRCLIST-LSSLFTWCNQTFAPTVEITAKDDETESTSKGEEPQKS 661

Query: 69  GLRPP 73
              PP
Sbjct: 662 KSEPP 666


>SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subunit
           Rpc37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 242

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 4   ARLSPSHSAP---TTRWPVAVEQLINKVDTEISRIATT 38
           A   PS+S+    T R P+   Q+  K +TE  +++TT
Sbjct: 155 AAAGPSNSSSGTSTPRGPIRAVQVTAKQNTEAPKVSTT 192


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 27  KVDTEISRIATTLQPDIPITVEARE-ADDTYEAETS 61
           K   E+S I+ TL   IP  ++ R+ +DD+ +A  S
Sbjct: 600 KTAPEVSPISVTLIEQIPFFLQKRDISDDSKDAVLS 635


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 9   SHSAPTTRWPVAVEQLINKVDTE 31
           S  APT  WP+A   +I   ++E
Sbjct: 901 SFHAPTLSWPIANTLMIEPTESE 923


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 12/41 (29%), Positives = 17/41 (41%)

Query: 14  TTRWPVAVEQLINKVDTEISRIATTLQPDIPITVEAREADD 54
           T  W +  E   N V  +  RI   + P I   V  + +DD
Sbjct: 259 TFLWGLQSESYSNDVFLKFQRIQNYIVPQITPEVSQKRSDD 299


>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
           protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 279

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 13/29 (44%), Positives = 13/29 (44%)

Query: 10  HSAPTTRWPVAVEQLINKVDTEISRIATT 38
           HSAP T   V V QL   V   I   A T
Sbjct: 226 HSAPETNEGVHVRQLAQSVGPGIDLTAVT 254


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 310

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 20 AVEQLINKVDTEISRIA-TTLQPDIPITVEAREADDTYEAETSGDVTGSSGLRPPVLTA 77
          A+  L+     EI  +  TT+  ++P+++  R A    +     D+   +G   P+L A
Sbjct: 14 AITALLAIASPEIELLGVTTVAGNVPVSMTTRNALQMLDLAGRPDIPVYAGSNKPLLRA 72


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.127    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 398,601
Number of Sequences: 5004
Number of extensions: 12726
Number of successful extensions: 39
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 11
length of query: 90
length of database: 2,362,478
effective HSP length: 61
effective length of query: 29
effective length of database: 2,057,234
effective search space: 59659786
effective search space used: 59659786
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)