Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002441-TA|BGIBMGA002441-PA|undefined
(90 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.098
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 0.92
SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.2
SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.6
SB_11098| Best HMM Match : Mak16 (HMM E-Value=5.1) 27 1.6
SB_10210| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.8
SB_24809| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.8
SB_18286| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.9
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 26 4.9
SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024) 26 4.9
SB_32577| Best HMM Match : PH (HMM E-Value=7e-17) 26 4.9
SB_32414| Best HMM Match : Osteopontin (HMM E-Value=2.4) 26 4.9
SB_55426| Best HMM Match : SH3_1 (HMM E-Value=1.90002e-41) 25 6.5
SB_53693| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.5
SB_48100| Best HMM Match : Transformer (HMM E-Value=5.4) 25 6.5
SB_43232| Best HMM Match : Morbilli_P (HMM E-Value=4.2) 25 6.5
SB_24324| Best HMM Match : PDZ (HMM E-Value=0.013) 25 6.5
SB_13774| Best HMM Match : Cgr1 (HMM E-Value=0.74) 25 8.6
SB_51335| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1887
Score = 31.5 bits (68), Expect = 0.098
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 4 ARLSPSHSAPTTRWPVAVEQLINKVDTEISRIATTLQPDIPITVEAREADDTYEAETSGD 63
A+ SPS TT WP +++ T + +T P P TVE D T E T+
Sbjct: 1377 AKPSPSRKHQTTTWPQTTQEMAAVQQT--TEAPSTTAP--PTTVE----DKTREEATTKP 1428
Query: 64 VTGSSGLRPPVLTA--VSPPPLRRRMT 88
T + P TA PP +R+ T
Sbjct: 1429 TTTTRKTTIPTTTASETKPPTIRKTTT 1455
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 28.3 bits (60), Expect = 0.92
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 9 SHSAPTTR---WPVAVEQLINKVDTEISRIATTLQPDIPITVEAREADDTYEAETSGDVT 65
S PTT WP +E K S + IP+T+E D TY+ +
Sbjct: 2610 SEKEPTTESGAWPTKMESPKKKNLMSPSDVNPPSLEKIPLTLERENTDSTYDRFKKRLFS 2669
Query: 66 GSSGLR-PPVLTAVSPPPLRRRMT 88
G +G +L P P + +T
Sbjct: 2670 GGNGKAFKEILQKTPPEPSVKEIT 2693
>SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1296
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 24 LINKVDTEISRIATTLQPDIPITVEAREADDTYEAET-SGDVTGSSGLRPPVLTAVSPPP 82
++ V+T ++ +T TV + + T A S T S + PP+LT+ +PPP
Sbjct: 716 VMTSVETRTDKVTSTAMETA--TVMSTKVVTTCSANCPSATPTTSLTMTPPMLTSTTPPP 773
Query: 83 LR 84
R
Sbjct: 774 ER 775
>SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 27.5 bits (58), Expect = 1.6
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 47 VEAREADDT--YEAETSGD-----VTGSSGLRPPVLTAVSPPPLRR 85
V AREA D+ Y +++ D V+ SG R P+ T + PP RR
Sbjct: 235 VNAREASDSRAYATDSTEDSGYSVVSRPSGSRDPLRTTIRLPPTRR 280
>SB_11098| Best HMM Match : Mak16 (HMM E-Value=5.1)
Length = 460
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 27 KVDTEISRIATTLQPDIPITVEAREADDTYEAETSGDVTGSSGL 70
KVD E+ I ++ ++ + + E + +E S D TGS L
Sbjct: 375 KVDDELDEIVNFVEEEVHLQSDFGEKEVIFEENKSQDFTGSRSL 418
>SB_10210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 793
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 61 SGDVTGSSGLRPPVLTAVSPP 81
SG VTGS G R PV T V+ P
Sbjct: 506 SGSVTGSIGERSPVGTPVASP 526
>SB_24809| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 780
Score = 26.6 bits (56), Expect = 2.8
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 5 RLSPSHSAPTTRWPVAVEQLINKVDTEISRIATTLQPDIPITVEAREADDTYEAE---TS 61
R+SP P RW + K+ T I+ +T+ TV + T AE T+
Sbjct: 421 RISPGVPLPQQRW----RSMAKKISTAITSAMSTVTTSFNTTVSSPTIKTTSIAEQNSTA 476
Query: 62 GDVTGSSGLRPPVLTA 77
G ++ S P +T+
Sbjct: 477 GTISESEAAGIPSITS 492
>SB_18286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1339
Score = 25.8 bits (54), Expect = 4.9
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 5 RLSPSHSAPTTRWPVAVEQLINKVDTEISR---IATTLQPDIPITVEAREAD 53
R + SA T P+ ++ + +KV+ E I T+ PD P+T A+ AD
Sbjct: 774 RCAKGESAATVDEPMNLDPVTDKVNGEHMEEDPIDATI-PDSPVTTNAKSAD 824
>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 1354
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 60 TSGDVTGSSGLRPPVLTAVSPPPLRRRMTHH 90
T GD + +S L P V+T P + THH
Sbjct: 527 THGDESPTSSLVPEVMTKDDHPAVHEVSTHH 557
>SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024)
Length = 286
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/45 (28%), Positives = 16/45 (35%)
Query: 38 TLQPDIPITVEAREADDTYEAETSGDVTGSSGLRPPVLTAVSPPP 82
T P P T T A T ++ PP A +PPP
Sbjct: 136 TTAPTTPTTPTTAATTPTTAATTPAAGAAAAAAPPPAAAAAAPPP 180
>SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)
Length = 1248
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 60 TSGDVTGSSGLRPPVLTAVSPPPLRRRMTHH 90
T GD + +S L P V+T P + THH
Sbjct: 306 THGDESPTSSLVPEVMTKDDHPAVHEVSTHH 336
>SB_32414| Best HMM Match : Osteopontin (HMM E-Value=2.4)
Length = 777
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 28 VDTEISRIATTLQPDIPITV-EAREADDTYEAETSGDVTGSSGLR 71
++ E + + + DI T+ E +++DD E E++ D SGL+
Sbjct: 455 IEAESEKTSEKDEEDIESTISEKKDSDDEEEQESADDGYSESGLK 499
>SB_55426| Best HMM Match : SH3_1 (HMM E-Value=1.90002e-41)
Length = 689
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 55 TYEAETSGDVTGSSGLRPPVLTAVSPPPLR 84
T +ET+G +G L P LTA++ P R
Sbjct: 116 TSRSETAGPKSGGGSLAPQGLTAIALYPYR 145
>SB_53693| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 570
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 23 QLINKVDTEISRIATTLQPDIPIT 46
Q+I+ T++S+I T L+P + IT
Sbjct: 161 QMIDASSTDLSKIYTMLKPSVAIT 184
>SB_48100| Best HMM Match : Transformer (HMM E-Value=5.4)
Length = 325
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 36 ATTLQPDIPITVEAREADDTYEAETSGDVTGSSGLRPPVLTAV 78
+T L +P+T+E R AD+ G + G P LTAV
Sbjct: 284 STALVDRVPVTLEPRAADEMLNTPYGGAYRQTPG-SPRELTAV 325
>SB_43232| Best HMM Match : Morbilli_P (HMM E-Value=4.2)
Length = 362
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 5 RLSPSHSAPTTRWPVAVEQLINKVDTEISRIATTLQPDIPITVEAREADDTYEAETSGDV 64
R+SP P RW +++ + + +S + T+ + + + + E T+G +
Sbjct: 26 RISPGVPLPQQRWRSMAKKISTAITSAMSTVTTSYNTTVS-SPTIKTTSISEETSTAGTI 84
Query: 65 TGSSGLRPPVLTA 77
+ S P +T+
Sbjct: 85 SESMTAGIPSITS 97
>SB_24324| Best HMM Match : PDZ (HMM E-Value=0.013)
Length = 406
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 37 TTLQPDIPITVEAREADDTYEAETSGDVTGSSGLRPPVLTA 77
TT PD ++EAD + + SGD T SS L+A
Sbjct: 282 TTSSPDQQARDGSQEADSRPQRQKSGDQTDSSNKPQRTLSA 322
>SB_13774| Best HMM Match : Cgr1 (HMM E-Value=0.74)
Length = 668
Score = 25.0 bits (52), Expect = 8.6
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 9 SHSAPTTRWPVAVEQLINKVDTEISRIATTLQPDIPITVEAREADDTYEAETSGDVTGSS 68
+HS P T PVA+E +D P + +T++ R D T+GD
Sbjct: 489 THSDPVTGLPVAIEIGSMMLDPNTGNPV----PIVSVTIDPRSGDVIPLGGTAGD--SER 542
Query: 69 GLRPPVLTAVS-PPPLRRR 86
G PVL S PL R
Sbjct: 543 GDEVPVLIGDSFTEPLSSR 561
>SB_51335| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 25.0 bits (52), Expect = 8.6
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 22 EQLINKVDTEISRIATTLQPDIPITVEAREADDTYEAETSGDVTGSSGLRP-----PVLT 76
+ L + V E S TL+ EA + + +TS +T SSG RP LT
Sbjct: 312 KSLKHSVSIESSYRRITLEKCKKAKESREEAAELADLDTSNIITSSSGRRPSRRCTQPLT 371
Query: 77 AVSPPPLR 84
A + PL+
Sbjct: 372 AATTGPLQ 379
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.312 0.127 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,121,232
Number of Sequences: 59808
Number of extensions: 104597
Number of successful extensions: 235
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 225
Number of HSP's gapped (non-prelim): 20
length of query: 90
length of database: 16,821,457
effective HSP length: 67
effective length of query: 23
effective length of database: 12,814,321
effective search space: 294729383
effective search space used: 294729383
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)
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