Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002439-TA|BGIBMGA002439-PA|IPR003750|Protein of unknown
function DUF171
(405 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0015 + 9407635-9407673,9407936-9408014,9408499-9408617,940... 130 2e-30
04_03_0014 + 9404174-9404377,9404508-9404708,9404796-9404862,940... 97 2e-20
05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264... 32 0.94
12_02_1088 - 25954506-25954652,25954769-25954918,25955011-259551... 31 1.7
04_04_1324 + 32659752-32661972,32662067-32662761 31 1.7
12_02_1034 - 25562214-25562280,25562661-25562794,25562990-255631... 31 2.2
02_05_0036 - 25292150-25293124,25294021-25294206,25294704-252948... 29 6.7
12_02_0870 - 23852923-23853228,23853416-23853728,23853813-238539... 29 8.8
>04_03_0015 +
9407635-9407673,9407936-9408014,9408499-9408617,
9408694-9408773,9409803-9409872,9410623-9410700,
9410743-9410871
Length = 197
Score = 130 bits (314), Expect = 2e-30
Identities = 67/143 (46%), Positives = 86/143 (60%)
Query: 207 QDVSTDKLLNPGMRVTVRMLPALKNGKKLKGKIVSLTTPRAETGVYWGYTVRIASTLSQV 266
++V +++L PG RVT+ M K KIVS ++PR E +YWGY VR AS L V
Sbjct: 13 RNVLVEQMLEPGKRVTIAMGTNRDITTACKRKIVSPSSPRDEMELYWGYKVRYASNLGGV 72
Query: 267 FTQCPYKDGYDVTIGTSDRGLSIDTLPDKEVKYNHVLIVFGGLHGIEAALESDEQLKVND 326
F+ PYK+GYD IGTS+ G I + + H+LI FGGL G+E +E D LK
Sbjct: 73 FSDSPYKEGYDYIIGTSEHGKIISSSELILPSFRHLLIAFGGLAGLEECIEEDRNLKGKG 132
Query: 327 ASLLFNHYVNVLPSQGSRTIRTE 349
+FN Y+N PSQGSRTIRTE
Sbjct: 133 VDDVFNTYLNTCPSQGSRTIRTE 155
>04_03_0014 +
9404174-9404377,9404508-9404708,9404796-9404862,
9405229-9405332
Length = 191
Score = 97.5 bits (232), Expect = 2e-20
Identities = 55/103 (53%), Positives = 69/103 (66%), Gaps = 12/103 (11%)
Query: 84 RTYLAGQIARAACVFCVDEVIVYDDIGEKLNTKKSKLEDS-DGVKVARKSCVQLARILQY 142
+T LAGQIARAA VF +DEV+V+D S +E+S D V+ + L RILQY
Sbjct: 66 KTTLAGQIARAATVFRIDEVVVFDS--------NSSVENSGDDVESGARF---LVRILQY 114
Query: 143 LECPQYLRKHFFPIHKDLQFAGLLNPLDAPHHLRQTNDFKFRE 185
LE PQYLR+ FP+H +L+F GLL PLDAPHHLR+ +FRE
Sbjct: 115 LETPQYLRRRLFPMHNNLKFVGLLPPLDAPHHLRKHEWSEFRE 157
>05_01_0334 -
2642998-2643063,2643125-2643169,2643552-2643617,
2643625-2643730,2643770-2644349,2645780-2645871,
2645969-2646035,2646126-2646231,2646628-2646708,
2646789-2647058,2647158-2648788,2648834-2649385,
2650602-2651324,2651451-2651526
Length = 1486
Score = 31.9 bits (69), Expect = 0.94
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 216 NPGMRVTVRMLPALKNGKKLKGKIVSLTTPRAETG-VYWGYTVRIASTLSQVFTQCPYKD 274
+P ++ + P L+NGK K K S +P+ TG + G T R T P K
Sbjct: 565 SPAKNLSAKDKPQLRNGKSKKAKGHSKNSPQKRTGSIQEGVTTRSKRRKLTELTPEPEKQ 624
Query: 275 GYDVTIGTSDRGLSIDTLPDKEVK 298
Y +I + G DKE K
Sbjct: 625 MYKGSILQGNPGDLKAKTRDKEAK 648
>12_02_1088 -
25954506-25954652,25954769-25954918,25955011-25955116,
25955247-25955569,25955656-25955790,25956310-25956444,
25956445-25956525,25956619-25956807,25956935-25957127,
25957244-25957350,25957457-25957531,25957619-25957774,
25957968-25958051,25958152-25958265,25958345-25958440,
25958543-25958633,25958721-25958836,25958934-25959093,
25960390-25960634
Length = 900
Score = 31.1 bits (67), Expect = 1.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 232 GKKLKGKIVSLTTPRAETGVYWGYTVRIASTLSQVFTQCP 271
G++L + P+ + G Y YT L +V+T+CP
Sbjct: 10 GERLSSSSPTAAAPQVDAGKYVRYTPEQVEALERVYTECP 49
>04_04_1324 + 32659752-32661972,32662067-32662761
Length = 971
Score = 31.1 bits (67), Expect = 1.7
Identities = 15/57 (26%), Positives = 33/57 (57%)
Query: 240 VSLTTPRAETGVYWGYTVRIASTLSQVFTQCPYKDGYDVTIGTSDRGLSIDTLPDKE 296
+S++ A+T V+ G R++ +L++ T+ P + +++ +SD G S D+ D +
Sbjct: 400 LSMSLNDADTEVHGGEHRRLSMSLNEAGTEQPSGEHRQLSVSSSDAGSSTDSTSDSD 456
>12_02_1034 -
25562214-25562280,25562661-25562794,25562990-25563109,
25563331-25563510,25563847-25564020,25564466-25564639,
25564734-25564827,25566088-25566242
Length = 365
Score = 30.7 bits (66), Expect = 2.2
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 83 LRTYLAGQIARAACVFCVDEVIVYDDIGEKLNTKKSKLEDSDGVKVARKS 132
LR Y ++AAC+ I Y + + ++K KL+ SDG V +S
Sbjct: 274 LRQYSEESFSKAACMVAPKSAISYPQVWKGQGSRKWKLDQSDGFFVQFES 323
>02_05_0036 -
25292150-25293124,25294021-25294206,25294704-25294874,
25295135-25295353,25295461-25295712,25295802-25295903,
25296487-25296684,25296762-25297046,25297640-25297709,
25297797-25297970,25298825-25298952,25299059-25299163,
25299686-25300030,25300361-25300563,25300964-25301045,
25301667-25301744
Length = 1190
Score = 29.1 bits (62), Expect = 6.7
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 119 KLEDSDGVKVARKSCVQLARILQYLECPQYLRKHFFPIHK 158
KL SD K + + ++ R L ++EC QYL K F +HK
Sbjct: 678 KLLFSDLDKSSVEHVLRQLRKLPWVECQQYLIKCFLKVHK 717
>12_02_0870 - 23852923-23853228,23853416-23853728,23853813-23853938,
23854038-23854243,23854311-23854443,23854607-23854688,
23854785-23854914,23855034-23855126,23855211-23855333,
23855786-23855977,23858230-23858394,23858697-23858768,
23858826-23858945,23859873-23859949,23860032-23860398,
23860738-23861871
Length = 1212
Score = 28.7 bits (61), Expect = 8.8
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 276 YDVTIGTSDRGLSIDTLPDKEVKYNHVLIVFGGLHGIEAALESDEQLKVNDASLLFNHYV 335
Y++ +G+ + D L + KY L VFG +H E + V D S L+
Sbjct: 1067 YEIMMGSYGEPMGRDGLEELWQKYKVDLAVFGHIHSYERTCPIYQNRCVQDGSNLYTGQF 1126
Query: 336 N 336
N
Sbjct: 1127 N 1127
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,311,804
Number of Sequences: 37544
Number of extensions: 392845
Number of successful extensions: 758
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 749
Number of HSP's gapped (non-prelim): 8
length of query: 405
length of database: 14,793,348
effective HSP length: 84
effective length of query: 321
effective length of database: 11,639,652
effective search space: 3736328292
effective search space used: 3736328292
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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