Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002439-TA|BGIBMGA002439-PA|IPR003750|Protein of unknown
function DUF171
(405 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25269| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 5e-18
SB_53553| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 3e-14
SB_52511| Best HMM Match : RVT_1 (HMM E-Value=0.00044) 48 1e-05
SB_23439| Best HMM Match : Pyr_redox_2 (HMM E-Value=0.00066) 32 0.72
SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_54074| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.9
SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067) 29 8.9
SB_26444| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-23) 29 8.9
SB_9080| Best HMM Match : zf-CXXC (HMM E-Value=2) 29 8.9
>SB_25269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 89.4 bits (212), Expect = 5e-18
Identities = 41/60 (68%), Positives = 51/60 (85%)
Query: 301 HVLIVFGGLHGIEAALESDEQLKVNDASLLFNHYVNVLPSQGSRTIRTEEAILIALSGLR 360
H+LIVFGGL G+EA+LESDE L V+D S LF+HY+N P QGSRTIRTEEAILI+++ L+
Sbjct: 2 HMLIVFGGLKGLEASLESDESLDVSDPSELFHHYLNTCPGQGSRTIRTEEAILISMAALK 61
Score = 34.3 bits (75), Expect = 0.18
Identities = 15/20 (75%), Positives = 19/20 (95%)
Query: 341 QGSRTIRTEEAILIALSGLR 360
QGSRTIRTEEAILI+++ L+
Sbjct: 70 QGSRTIRTEEAILISMAALK 89
>SB_53553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 77.0 bits (181), Expect = 3e-14
Identities = 41/73 (56%), Positives = 50/73 (68%), Gaps = 3/73 (4%)
Query: 91 IARAACVFCVDEVIVYDDIGEKLNTKKSKLEDSDGVKVARKSCVQLARILQYLECPQYLR 150
IARA VF VDEVIV+++ + L+ K + + A +QLARILQYLECPQYLR
Sbjct: 1 IARAVVVFNVDEVIVFNESRKSLDKSKDGVSNFHSKADAN---LQLARILQYLECPQYLR 57
Query: 151 KHFFPIHKDLQFA 163
K FFP HKDLQ+A
Sbjct: 58 KAFFPRHKDLQYA 70
Score = 76.6 bits (180), Expect = 3e-14
Identities = 31/56 (55%), Positives = 41/56 (73%)
Query: 237 GKIVSLTTPRAETGVYWGYTVRIASTLSQVFTQCPYKDGYDVTIGTSDRGLSIDTL 292
G +VS + PR + G+YWGY+VR+A + S VFT+ PY GYDV IGTS+RG +D L
Sbjct: 77 GNVVSPSAPRVDAGLYWGYSVRLAPSFSDVFTESPYPQGYDVMIGTSERGAPVDCL 132
>SB_52511| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
Length = 513
Score = 48.0 bits (109), Expect = 1e-05
Identities = 22/26 (84%), Positives = 25/26 (96%)
Query: 65 TVSIAVPSSILENAQSAELRTYLAGQ 90
TVS+A+P SIL+NAQSAELRTYLAGQ
Sbjct: 61 TVSLALPGSILDNAQSAELRTYLAGQ 86
>SB_23439| Best HMM Match : Pyr_redox_2 (HMM E-Value=0.00066)
Length = 417
Score = 32.3 bits (70), Expect = 0.72
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 292 LPDKEVKYNHVLIVFGGLHGIE--AALESDEQLKVNDASLLFNHYVNVLPSQGSR 344
+P K K HV+IV GG GI A L++D QL + DA F+H + S R
Sbjct: 41 VPVKPFKDTHVVIVGGGYGGINLAAKLKNDCQLTLIDARDSFHHNMGAQRSSVER 95
>SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 29.5 bits (63), Expect = 5.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 249 TGVYWGYTVRIASTLSQVFTQCPYKDGYDVTIGT 282
T + W +R + L +V TQ PYK YD I T
Sbjct: 112 TSMPWKERMRFINALIKVSTQDPYKRSYDQLIAT 145
>SB_54074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 28.7 bits (61), Expect = 8.9
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 79 QSAELRTYLAGQIARAAC-VFCVDEVIVYDDIGEKLNTKKS 118
Q +T+ A Q+ +AAC FCV E++ + E LNT S
Sbjct: 348 QEESFKTW-AKQVFKAACDTFCVGEMVNVAEADESLNTLSS 387
>SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067)
Length = 1873
Score = 28.7 bits (61), Expect = 8.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 369 PMVFKGSGIALSSAFPNFKPDSDHSGAENNV-DLSRFD 405
P VF +A AFP+F +H G E + DLS +D
Sbjct: 129 PKVFGFEDVACKGAFPHFFNIPEHQGYEGPIPDLSYYD 166
>SB_26444| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-23)
Length = 1024
Score = 28.7 bits (61), Expect = 8.9
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 101 DEVIVYDDIGEKLNTKKSK-LEDSDGVKVARKSCVQLARILQY 142
D+VIV D+ KL T K+K LED +K K+ +QL ++++Y
Sbjct: 278 DKVIV--DLEGKLETLKAKRLEDKHKMKDLEKARMQLEQMIEY 318
>SB_9080| Best HMM Match : zf-CXXC (HMM E-Value=2)
Length = 390
Score = 28.7 bits (61), Expect = 8.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 369 PMVFKGSGIALSSAFPNFKPDSDHSGAENNV-DLSRFD 405
P VF +A AFP+F +H G E + DLS +D
Sbjct: 260 PKVFGFEDVACKGAFPHFFNIPEHQGYEGPIPDLSYYD 297
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.134 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,003,062
Number of Sequences: 59808
Number of extensions: 467287
Number of successful extensions: 775
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 766
Number of HSP's gapped (non-prelim): 13
length of query: 405
length of database: 16,821,457
effective HSP length: 84
effective length of query: 321
effective length of database: 11,797,585
effective search space: 3787024785
effective search space used: 3787024785
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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