GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002439-TA|BGIBMGA002439-PA|IPR003750|Protein of unknown
function DUF171
         (405 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00031-4|AAK18867.1|  378|Caenorhabditis elegans Hypothetical pr...   216   2e-56
AC006714-4|AAK29715.4|  357|Caenorhabditis elegans Hypothetical ...    29   4.5  

>U00031-4|AAK18867.1|  378|Caenorhabditis elegans Hypothetical
           protein B0361.6 protein.
          Length = 378

 Score =  216 bits (528), Expect = 2e-56
 Identities = 128/314 (40%), Positives = 180/314 (57%), Gaps = 15/314 (4%)

Query: 65  TVSIAVPSSILENAQSAELRTYLAGQIARAACVFCVDEVIVYDD----IGEKLNTKKSKL 120
           T+SIAVP   L NAQSAELRTY+AGQIARAA ++ VDE+I+YD+      E +N   +  
Sbjct: 67  TISIAVPGQFLNNAQSAELRTYMAGQIARAATLYRVDEIIIYDESCRMTDEAVNAYYNGT 126

Query: 121 EDSDGVKVAR--KSCVQLARILQYLECPQYLRKHFFPIHKDLQFAGLLNPLDAPHHLR-Q 177
              + +      + C  LA+IL+YLECPQYLRK  FPI K L+ AGLLNPLDA HHL+  
Sbjct: 127 WQGNLIPAETNYEGCFYLAKILEYLECPQYLRKDLFPIQKPLKNAGLLNPLDAQHHLKYD 186

Query: 178 TNDFKFREGITMNKKVKPGKGSQVNVGLLQDVSTDK---LLNPGMRVTVRMLPALKNGKK 234
               +FREG+ + K+ K G+G   N+GL ++   D     L P  RVTV +    +  K 
Sbjct: 187 EKTLRFREGVVLKKRSKDGRGPICNIGLEKEFEIDSDAVQLPPYTRVTVEIKNLTEQCKL 246

Query: 235 LKGKIVSLTTPRAETGVYWGYTVRIASTLSQVFTQCPYKDGYDVTIGTSDRGLSIDTLPD 294
            +G I S  T   ETG+YWGY+VR+ + L +V         +D+  G S RG     +  
Sbjct: 247 YRGSITSGATVTRETGLYWGYSVRLMTGLQKVL----QAKKFDIVAGVSPRGKLASQMDV 302

Query: 295 KEVKYNHVLIVFGGLHGIEAALESDEQLKVNDASLLFNHYVNVLP-SQGSRTIRTEEAIL 353
             +    +L+VFGG+ G++AA+ES+E  +   A   F+  +     S GSR+ R EE +L
Sbjct: 303 CILNKPKILLVFGGVAGVDAAVESEELAEWRRAEDAFDVLIRTTSLSNGSRSERVEENVL 362

Query: 354 IALSGLRNKLQANN 367
             L+ ++  L+  N
Sbjct: 363 SVLAQVQCHLETLN 376


>AC006714-4|AAK29715.4|  357|Caenorhabditis elegans Hypothetical
           protein Y119D3B.16 protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 163 AGLLNPLDAPHHLRQTNDFKFREGITMNKKVKPGKGSQVNVGLLQDVSTDKLL 215
           A +   L   HH ++  D K   G+T + K K  + + VN  L + +   K L
Sbjct: 15  AAITTQLAGVHHHQEATDMKRFTGVTRSNKAKANRNTHVNEKLFRRMRGRKTL 67


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.134    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,878,008
Number of Sequences: 27539
Number of extensions: 347479
Number of successful extensions: 736
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 730
Number of HSP's gapped (non-prelim): 2
length of query: 405
length of database: 12,573,161
effective HSP length: 83
effective length of query: 322
effective length of database: 10,287,424
effective search space: 3312550528
effective search space used: 3312550528
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)