GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002438-TA|BGIBMGA002438-PA|undefined
         (128 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    25   0.30 
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    25   0.30 
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    25   0.30 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   0.90 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   0.90 
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   2.8  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   3.6  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 24.6 bits (51), Expect = 0.30
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 96  WRHARSIQAQPRFTAGFEQHWPLQANLSTDNAN 128
           W   R ++ + R   G     P+ A+LST N+N
Sbjct: 300 WFQNRRMKQKKRMKEGLIPPEPISASLSTSNSN 332


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 24.6 bits (51), Expect = 0.30
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 96  WRHARSIQAQPRFTAGFEQHWPLQANLSTDNAN 128
           W   R ++ + R   G     P+ A+LST N+N
Sbjct: 89  WFQNRRMKQKKRMKEGLIPPEPISASLSTSNSN 121


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 24.6 bits (51), Expect = 0.30
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 96  WRHARSIQAQPRFTAGFEQHWPLQANLSTDNAN 128
           W   R ++ + R   G     P+ A+LST N+N
Sbjct: 89  WFQNRRMKQKKRMKEGLIPPEPISASLSTSNSN 121


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 0.90
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 12   RIKNSGYHNPRILADKSTSLTVVPQQASIA 41
            +I ++  +NP I A +  SL  V Q+ SIA
Sbjct: 1400 QIGSTSSNNPSISAFRKKSLAYVQQRMSIA 1429



 Score = 21.0 bits (42), Expect = 3.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 33  VVPQQASIAASTGPSQPTHRASWSYG 58
           V+P   + A+S G   P H +S+  G
Sbjct: 339 VLPGNYANASSVGSRNPIHTSSYMTG 364


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 0.90
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 12   RIKNSGYHNPRILADKSTSLTVVPQQASIA 41
            +I ++  +NP I A +  SL  V Q+ SIA
Sbjct: 1400 QIGSTSSNNPSISAFRKKSLAYVQQRMSIA 1429



 Score = 21.0 bits (42), Expect = 3.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 33  VVPQQASIAASTGPSQPTHRASWSYG 58
           V+P   + A+S G   P H +S+  G
Sbjct: 339 VLPGNYANASSVGSRNPIHTSSYMTG 364


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 34  VPQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINRSIQAQS 86
           V ++ S+A S G       A+  Y      L+   ++I  + R+I    +AQS
Sbjct: 796 VQKEQSLAHSVGVFLTIFNAAHCYLATELVLMLKNRYIILNGRLIKMETKAQS 848


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 33  VVPQQASIAASTGPSQPTHRASWSYG 58
           V+P   + A+S G   P H +S+  G
Sbjct: 106 VLPGNYANASSVGSRNPIHTSSYMTG 131


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.125    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,802
Number of Sequences: 317
Number of extensions: 909
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 128
length of database: 114,650
effective HSP length: 50
effective length of query: 78
effective length of database: 98,800
effective search space:  7706400
effective search space used:  7706400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)