GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002438-TA|BGIBMGA002438-PA|undefined
         (128 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    27   0.92 
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    26   1.6  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   2.1  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    25   4.9  
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    24   8.6  

>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 27.1 bits (57), Expect = 0.92
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 19  HNPRILADKSTSLTVVPQQASIAASTGPSQPTHRAS 54
           H P +  DK+     VP +A++  + G S+P   AS
Sbjct: 65  HLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISAS 100


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 17/73 (23%), Positives = 30/73 (41%)

Query: 4   ETLALSERRIKNSGYHNPRILADKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQLHC 63
           E L++     +N+    P  LA  ++S ++V Q      + G  + T R        +H 
Sbjct: 548 EALSVPLSGARNTAASRPTNLAAGNSSASIVQQLLECGGTMGQQKMTSRIRELTERVMHS 607

Query: 64  LITPQQFIAAHDR 76
           L+ P      HD+
Sbjct: 608 LMRPVPLDLPHDQ 620


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 26  DKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINRSIQAQ 85
           +K T  +V    A  A +    +   R   S   +L C I   ++    +R    S  ++
Sbjct: 310 NKETRTSVEITAAENAQAAVTLRKVTRQLGSLLHELECFIQHHEY--TKERTAQSSPSSR 367

Query: 86  SRLTADFEQHWRHARSIQA 104
             + ++FEQHW  A   ++
Sbjct: 368 MSMDSNFEQHWYDAEDYES 386


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 31  LTVVPQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFIAAH-DRIINRSIQAQS 86
           L  + +      +  P+  +     S  T L  LI+PQ  I +H D+  N+S+ ++S
Sbjct: 486 LVAINKSQEALLNNSPNSKSGSTQLSASTCLSDLISPQLSILSHEDKRENQSVNSES 542


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 13/52 (25%), Positives = 26/52 (50%)

Query: 6   LALSERRIKNSGYHNPRILADKSTSLTVVPQQASIAASTGPSQPTHRASWSY 57
           L+LSE   +++   NP+   D+    T   Q++++A S   +    RA + +
Sbjct: 175 LSLSESTAQSNKVENPQSTKDEPLQKTNQRQESNLATSPASTVSRVRALYDF 226


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.125    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 548,931
Number of Sequences: 5004
Number of extensions: 17590
Number of successful extensions: 48
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 5
length of query: 128
length of database: 2,362,478
effective HSP length: 65
effective length of query: 63
effective length of database: 2,037,218
effective search space: 128344734
effective search space used: 128344734
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)