GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002438-TA|BGIBMGA002438-PA|undefined
         (128 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0656 + 5652383-5653009,5653260-5653736,5654969-5655289,565...    29   1.2  
02_05_0665 - 30720842-30721003,30721290-30721448,30721555-307216...    29   1.5  
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376     28   2.7  
02_05_1276 + 35397948-35398298,35398937-35401738,35402085-354023...    27   4.7  
03_02_1002 + 13124398-13124994,13125116-13125346,13125993-131262...    27   6.2  
03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,367...    27   6.2  
11_01_0274 - 2050667-2052115                                           26   8.2  
09_02_0016 - 2994218-2994595                                           26   8.2  

>08_01_0656 +
           5652383-5653009,5653260-5653736,5654969-5655289,
           5655434-5655589,5656062-5656127,5656196-5656315
          Length = 588

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 21/88 (23%), Positives = 33/88 (37%)

Query: 7   ALSERRIKNSGYHNPRILADKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQLHCLIT 66
           AL    +K    H   I +    SLT+   + S       S P  R   + G  +  +  
Sbjct: 183 ALEILELKKCSLHGHEISSTSLKSLTMSKSKGSNPNVDPESTPARRWQLATGEPIQSVHI 242

Query: 67  PQQFIAAHDRIINRSIQAQSRLTADFEQ 94
              F+  H R +NR  Q+  R +   +Q
Sbjct: 243 LVSFVVHHRRAVNRGSQSFRRSSTSSKQ 270


>02_05_0665 -
           30720842-30721003,30721290-30721448,30721555-30721687,
           30722042-30722227,30722377-30722906
          Length = 389

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 3   RETLALS-ERRIKNSGYHNPRILADKSTSLTVVPQQASI-AASTGPSQPTHRASWSYGTQ 60
           RET A+  ERR  +  +  P +  D + ++      A++  AST  S  T    W  G  
Sbjct: 62  RETAAMQLERRRADWAHSRPVVALDIAWNVAFAAAAAAVLVASTEESPVTPLRLWLVGYA 121

Query: 61  LHCLI 65
           L CL+
Sbjct: 122 LQCLV 126


>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
          Length = 1135

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 24   LADKSTSLTVVPQQASIA-ASTGPSQPTHRASW 55
            LAD     T  P+  SI  AST PSQ  H A W
Sbjct: 1036 LADFVAEWTPAPETVSIPEASTDPSQLPHTAHW 1068


>02_05_1276 +
           35397948-35398298,35398937-35401738,35402085-35402306,
           35402503-35402562,35402615-35402698,35402740-35402816,
           35403147-35403363
          Length = 1270

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 4   ETLALSERRIKNSGYHNPRILADKSTSLTVVPQQASIAASTGPSQPTHRAS 54
           +T  L + R+  S  H    +A    SL      + +A S  P++PTHRAS
Sbjct: 132 DTQILKKFRLLQSSKH---AIAPFVKSLVAPAVPSKVARSNTPTKPTHRAS 179


>03_02_1002 +
           13124398-13124994,13125116-13125346,13125993-13126282,
           13126405-13126498
          Length = 403

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 21  PRILADKSTSLTVVPQQASIAASTGPS-QPTHRASWSYGTQLHCLITPQQFIAAHDRIIN 79
           P   A+   S  V   +   + S G S + TH+ +   GT +  L    +F+   DR + 
Sbjct: 302 PASSAEACISSFVQMSELCPSMSNGSSMEETHQTNPGNGTPMQVLPKMPEFVPCPDRNLV 361

Query: 80  RSIQAQSRLTADFEQHWRH-ARSIQAQPR 107
            S   + R T  F++  R+ +R  +A  R
Sbjct: 362 ISRYKEKRKTRRFDRQVRYESRKARADSR 390


>03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,
            3675973-3676042,3676157-3676224
          Length = 1337

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 85   QSRLTADFEQHWRHARSIQAQPRFTAGFEQHWPLQANL 122
            Q+  + +FE HW    ++ +  + T G+E+  P+ +NL
Sbjct: 1225 QAGFSPNFEMHWSVISNLSSNAKRTTGYEK--PILSNL 1260


>11_01_0274 - 2050667-2052115
          Length = 482

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 46  PSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINRSIQAQSRLTADFEQHWRHARSIQAQ 105
           PS PTH    +YG Q H  I P Q +A     I+ S      L+     H R   S+ A 
Sbjct: 15  PSAPTHFLIVAYGIQSH--INPAQNLAHRLASIDAS-SVMCTLSIHASAHRRMFSSLIAS 71

Query: 106 P 106
           P
Sbjct: 72  P 72


>09_02_0016 - 2994218-2994595
          Length = 125

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 62  HCLITPQQFIAAHDRIINRSIQAQSRLTADFEQHWRHA-RSIQAQPR 107
           H +++P QF+ A DR        + R T  FE+  R+A R   A+ R
Sbjct: 44  HSIMSPPQFMGAIDREARVHRYREKRKTRRFEKTIRYASRKAYAETR 90


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.125    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,488,924
Number of Sequences: 37544
Number of extensions: 117146
Number of successful extensions: 297
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 296
Number of HSP's gapped (non-prelim): 9
length of query: 128
length of database: 14,793,348
effective HSP length: 74
effective length of query: 54
effective length of database: 12,015,092
effective search space: 648814968
effective search space used: 648814968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)