GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002438-TA|BGIBMGA002438-PA|undefined
         (128 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    25   0.81 
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    24   1.4  
AY341205-1|AAR13769.1|  285|Anopheles gambiae period protein.          24   1.9  
AY341204-1|AAR13768.1|  285|Anopheles gambiae period protein.          24   1.9  
AY341203-1|AAR13767.1|  285|Anopheles gambiae period protein.          24   1.9  
AY341202-1|AAR13766.1|  285|Anopheles gambiae period protein.          24   1.9  

>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1099

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 68   QQFIAAHDRIINRSIQAQSRLTADFEQHWRHARSIQAQPRFTAGFEQHWPLQANLSTDNA 127
            QQ +       +R  +A  R+TA  +Q W   R+  A      G EQH+   A+L    A
Sbjct: 983  QQHLLRDAESWSRICEAAKRITASLQQAWDDERAALA----AHGNEQHFEEVADLEARRA 1038


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/12 (75%), Positives = 10/12 (83%)

Query: 41  AASTGPSQPTHR 52
           AA+TGP  PTHR
Sbjct: 913 AAATGPPPPTHR 924


>AY341205-1|AAR13769.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 2   NRETLALSER-RIKNSGYHNPRILADKSTSLTVVPQQASIAASTG 45
           +R  + + E+ ++ +SG  N   + D+  S  V P Q   +AS G
Sbjct: 179 SRPAMNIEEQMKMDSSGGTNTETIGDEQQSHAVSPNQRGFSASGG 223


>AY341204-1|AAR13768.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 2   NRETLALSER-RIKNSGYHNPRILADKSTSLTVVPQQASIAASTG 45
           +R  + + E+ ++ +SG  N   + D+  S  V P Q   +AS G
Sbjct: 179 SRPAMNIEEQMKMDSSGGTNTETIGDEQQSHAVSPNQRGFSASGG 223


>AY341203-1|AAR13767.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 2   NRETLALSER-RIKNSGYHNPRILADKSTSLTVVPQQASIAASTG 45
           +R  + + E+ ++ +SG  N   + D+  S  V P Q   +AS G
Sbjct: 179 SRPAMNIEEQMKMDSSGGTNTETIGDEQQSHAVSPNQRGFSASGG 223


>AY341202-1|AAR13766.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 2   NRETLALSER-RIKNSGYHNPRILADKSTSLTVVPQQASIAASTG 45
           +R  + + E+ ++ +SG  N   + D+  S  V P Q   +AS G
Sbjct: 179 SRPAMNIEEQMKMDSSGGTNTETIGDEQQSHAVSPNQRGFSASGG 223


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.125    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,001
Number of Sequences: 2123
Number of extensions: 4057
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 6
length of query: 128
length of database: 516,269
effective HSP length: 57
effective length of query: 71
effective length of database: 395,258
effective search space: 28063318
effective search space used: 28063318
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)