GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002438-TA|BGIBMGA002438-PA|undefined
         (128 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-593|AAF54032.3|  946|Drosophila melanogaster CG32466-PA...    31   0.62 
AF247765-1|AAF86225.1| 1446|Drosophila melanogaster Toll-7 protein.    30   0.82 
AE013599-2957|AAF57514.1| 1446|Drosophila melanogaster CG8595-PA...    30   0.82 
AF395905-1|AAL59599.1|  943|Drosophila melanogaster rotund protein.    30   1.1  
U78084-1|AAB53369.1|  527|Drosophila melanogaster presenilin pro...    29   2.5  
AF093402-2|AAD52708.1|  527|Drosophila melanogaster presenilin a...    29   2.5  
AF084184-2|AAC33128.1|  527|Drosophila melanogaster presenilin s...    29   2.5  
AF017025-1|AAD01611.1|  272|Drosophila melanogaster presenilin p...    29   2.5  
AE014296-3364|AAN12132.1|  527|Drosophila melanogaster CG18803-P...    29   2.5  
AY052049-1|AAK93473.1| 1674|Drosophila melanogaster LP07057p pro...    28   4.4  
AF242375-1|AAK27793.2| 1338|Drosophila melanogaster phosphatidyl...    28   4.4  
AE014296-82|AAN11438.1| 1338|Drosophila melanogaster CG7004-PC, ...    28   4.4  
AE014296-81|AAN11437.1| 1674|Drosophila melanogaster CG7004-PB, ...    28   4.4  
AE014296-80|AAF47375.2| 1674|Drosophila melanogaster CG7004-PA, ...    28   4.4  
AY122156-1|AAM52668.1|  376|Drosophila melanogaster LD10135p pro...    27   7.6  
AE014297-1337|AAN13518.1|  213|Drosophila melanogaster CG6813-PA...    27   7.6  
AE014134-2274|AAF53239.1|  376|Drosophila melanogaster CG9933-PA...    27   7.6  

>AE014297-593|AAF54032.3|  946|Drosophila melanogaster CG32466-PA,
           isoform A protein.
          Length = 946

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 7   ALSERRIKNSGYHNPRILADKSTSLTVVPQQASIAASTGPSQPT-----HRASWSYGTQL 61
           A S   +  + +HN  + A  + +L VVPQ  + +   GP   +     H      G + 
Sbjct: 429 ASSHHAVAAAHHHNQAVAAASAAALLVVPQPINASKMGGPGGVSSVAGGHATGGGSGRKY 488

Query: 62  HCLITPQQFIAAHDRIINRSI 82
            C + PQ F +  D  ++  I
Sbjct: 489 QCKMCPQIFSSKADLQLHTQI 509


>AF247765-1|AAF86225.1| 1446|Drosophila melanogaster Toll-7
          protein.
          Length = 1446

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 26 DKSTSLTVVPQQASIAASTG-PSQPTHRASWSY-GT-QLHCLI 65
          D S+ L+ VP  + + A+   PS P ++ SWSY GT  +HC +
Sbjct: 49 DYSSLLSNVPAASPVPANPSQPSGPANQCSWSYNGTSSVHCAL 91


>AE013599-2957|AAF57514.1| 1446|Drosophila melanogaster CG8595-PA
          protein.
          Length = 1446

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 26 DKSTSLTVVPQQASIAASTG-PSQPTHRASWSY-GT-QLHCLI 65
          D S+ L+ VP  + + A+   PS P ++ SWSY GT  +HC +
Sbjct: 49 DYSSLLSNVPAASPVPANPSQPSGPANQCSWSYNGTSSVHCAL 91


>AF395905-1|AAL59599.1|  943|Drosophila melanogaster rotund protein.
          Length = 943

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 7   ALSERRIKNSGYHNPRILADKSTSLTVVPQQASIAASTGPSQPT-----HRASWSYGTQL 61
           A S   +  + +HN  + A  + +L VVPQ  + +   GP   +     H      G + 
Sbjct: 426 ASSHHAVAAAHHHNQAVAAASAAALLVVPQPINASKMGGPRGVSSVAGGHATRGGSGRKY 485

Query: 62  HCLITPQQFIAAHDRIINRSI 82
            C + PQ F +  D  ++  I
Sbjct: 486 QCKMCPQIFSSKADLQLHTQI 506


>U78084-1|AAB53369.1|  527|Drosophila melanogaster presenilin
           protein.
          Length = 527

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 14/92 (15%)

Query: 32  TVVPQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINRSIQAQSRLTAD 91
           TV PQQ+   AS+ PS  ++  + +  TQ + L +P+   A+  R  N          + 
Sbjct: 321 TVTPQQSQATASSSPSS-SNSTTTTRATQ-NSLASPEAAAASGQRTGN----------SH 368

Query: 92  FEQHWRHARSIQAQPRFTAGFEQHWPLQANLS 123
             Q+ R   S+ A     AGF Q W   ANLS
Sbjct: 369 PRQNQRDDGSVLATEAEAAGFTQEW--SANLS 398


>AF093402-2|AAD52708.1|  527|Drosophila melanogaster presenilin a1
           protein.
          Length = 527

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 14/92 (15%)

Query: 32  TVVPQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINRSIQAQSRLTAD 91
           TV PQQ+   AS+ PS  ++  + +  TQ + L +P+   A+  R  N          + 
Sbjct: 321 TVTPQQSQATASSSPSS-SNSTTTTRATQ-NSLASPEAAAASGQRTGN----------SH 368

Query: 92  FEQHWRHARSIQAQPRFTAGFEQHWPLQANLS 123
             Q+ R   S+ A     AGF Q W   ANLS
Sbjct: 369 PRQNQRDDGSVLATEAEAAGFTQEW--SANLS 398


>AF084184-2|AAC33128.1|  527|Drosophila melanogaster presenilin
           short form protein.
          Length = 527

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 14/92 (15%)

Query: 32  TVVPQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINRSIQAQSRLTAD 91
           TV PQQ+   AS+ PS  ++  + +  TQ + L +P+   A+  R  N          + 
Sbjct: 321 TVTPQQSQATASSSPSS-SNSTTTTRATQ-NSLASPEAAAASGQRTGN----------SH 368

Query: 92  FEQHWRHARSIQAQPRFTAGFEQHWPLQANLS 123
             Q+ R   S+ A     AGF Q W   ANLS
Sbjct: 369 PRQNQRDDGSVLATEAEAAGFTQEW--SANLS 398


>AF017025-1|AAD01611.1|  272|Drosophila melanogaster presenilin
           protein.
          Length = 272

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 14/92 (15%)

Query: 32  TVVPQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINRSIQAQSRLTAD 91
           TV PQQ+   AS+ PS  ++  + +  TQ + L +P+   A+  R  N          + 
Sbjct: 66  TVTPQQSQATASSSPSS-SNSTTTTRATQ-NSLASPEAAAASGQRTGN----------SH 113

Query: 92  FEQHWRHARSIQAQPRFTAGFEQHWPLQANLS 123
             Q+ R   S+ A     AGF Q W   ANLS
Sbjct: 114 PRQNQRDDGSVLATEAEAAGFTQEW--SANLS 143


>AE014296-3364|AAN12132.1|  527|Drosophila melanogaster CG18803-PB,
           isoform B protein.
          Length = 527

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 14/92 (15%)

Query: 32  TVVPQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINRSIQAQSRLTAD 91
           TV PQQ+   AS+ PS  ++  + +  TQ + L +P+   A+  R  N          + 
Sbjct: 321 TVTPQQSQATASSSPSS-SNSTTTTRATQ-NSLASPEAAAASGQRTGN----------SH 368

Query: 92  FEQHWRHARSIQAQPRFTAGFEQHWPLQANLS 123
             Q+ R   S+ A     AGF Q W   ANLS
Sbjct: 369 PRQNQRDDGSVLATEAEAAGFTQEW--SANLS 398


>AY052049-1|AAK93473.1| 1674|Drosophila melanogaster LP07057p
           protein.
          Length = 1674

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/64 (25%), Positives = 28/64 (43%)

Query: 23  ILADKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINRSI 82
           +L   S+        A+ AAST P+ PT   + +  ++L  L  P   +   +R +N  +
Sbjct: 788 LLTSSSSIKAAAAAAANSAASTPPATPTEALAANSNSKLQPLSDPSADLKVKERTLNLRL 847

Query: 83  QAQS 86
              S
Sbjct: 848 PGDS 851


>AF242375-1|AAK27793.2| 1338|Drosophila melanogaster
           phosphatidylinositol 4-kinasebeta isoform protein.
          Length = 1338

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/64 (25%), Positives = 28/64 (43%)

Query: 23  ILADKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINRSI 82
           +L   S+        A+ AAST P+ PT   + +  ++L  L  P   +   +R +N  +
Sbjct: 452 LLTSSSSIKAAAAAAANSAASTPPATPTEALAANSNSKLQPLSDPSADLKVKERTLNLRL 511

Query: 83  QAQS 86
              S
Sbjct: 512 PGDS 515


>AE014296-82|AAN11438.1| 1338|Drosophila melanogaster CG7004-PC,
           isoform C protein.
          Length = 1338

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/64 (25%), Positives = 28/64 (43%)

Query: 23  ILADKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINRSI 82
           +L   S+        A+ AAST P+ PT   + +  ++L  L  P   +   +R +N  +
Sbjct: 452 LLTSSSSIKAAAAAAANSAASTPPATPTEALAANSNSKLQPLSDPSADLKVKERTLNLRL 511

Query: 83  QAQS 86
              S
Sbjct: 512 PGDS 515


>AE014296-81|AAN11437.1| 1674|Drosophila melanogaster CG7004-PB,
           isoform B protein.
          Length = 1674

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/64 (25%), Positives = 28/64 (43%)

Query: 23  ILADKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINRSI 82
           +L   S+        A+ AAST P+ PT   + +  ++L  L  P   +   +R +N  +
Sbjct: 788 LLTSSSSIKAAAAAAANSAASTPPATPTEALAANSNSKLQPLSDPSADLKVKERTLNLRL 847

Query: 83  QAQS 86
              S
Sbjct: 848 PGDS 851


>AE014296-80|AAF47375.2| 1674|Drosophila melanogaster CG7004-PA,
           isoform A protein.
          Length = 1674

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/64 (25%), Positives = 28/64 (43%)

Query: 23  ILADKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINRSI 82
           +L   S+        A+ AAST P+ PT   + +  ++L  L  P   +   +R +N  +
Sbjct: 788 LLTSSSSIKAAAAAAANSAASTPPATPTEALAANSNSKLQPLSDPSADLKVKERTLNLRL 847

Query: 83  QAQS 86
              S
Sbjct: 848 PGDS 851


>AY122156-1|AAM52668.1|  376|Drosophila melanogaster LD10135p
           protein.
          Length = 376

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 38  ASIAASTGPSQPTHRASWSYGTQLHCLITPQQ 69
           AS++AST  S PT  +S   G+ L    TP Q
Sbjct: 128 ASVSASTSTSTPTSASSSISGSMLESQQTPSQ 159


>AE014297-1337|AAN13518.1|  213|Drosophila melanogaster CG6813-PA
           protein.
          Length = 213

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 21  PRILADKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQLH-CLITPQQFIAAHDR 76
           P   A+K ++ T +  Q SI   TGP + T       G Q + C+  P++F ++  R
Sbjct: 116 PMPSAEKVSAPTSLNHQKSIGGGTGPYELTSHTRIHTGEQPYVCVYCPRRFSSSGAR 172


>AE014134-2274|AAF53239.1|  376|Drosophila melanogaster CG9933-PA
           protein.
          Length = 376

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 38  ASIAASTGPSQPTHRASWSYGTQLHCLITPQQ 69
           AS++AST  S PT  +S   G+ L    TP Q
Sbjct: 128 ASVSASTSTSTPTSASSSISGSMLESQQTPSQ 159


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.317    0.125    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,166,443
Number of Sequences: 52641
Number of extensions: 218422
Number of successful extensions: 724
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 717
Number of HSP's gapped (non-prelim): 17
length of query: 128
length of database: 24,830,863
effective HSP length: 77
effective length of query: 51
effective length of database: 20,777,506
effective search space: 1059652806
effective search space used: 1059652806
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)