GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002438-TA|BGIBMGA002438-PA|undefined
         (128 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81084-2|CAB03107.1|  276|Caenorhabditis elegans Hypothetical pr...    31   0.19 
AF038619-3|AAO91713.1|  126|Caenorhabditis elegans Hypothetical ...    27   4.1  
Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical pr...    26   7.1  
L13200-7|AAA28189.1|  206|Caenorhabditis elegans Prion-like-(q/n...    26   7.1  

>Z81084-2|CAB03107.1|  276|Caenorhabditis elegans Hypothetical
          protein F46A9.2 protein.
          Length = 276

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 46 PSQPTHRASWSYG---TQLHCLITPQQFIAAHDRIINRSIQAQSRLTAD 91
          PS P+H   W+Y    T L+  I+P  F   +D+ +  +++ ++++  D
Sbjct: 35 PSAPSHDEQWTYNFFITPLNLNISPTDFKIPNDKSVKYTVKCEAKIKQD 83


>AF038619-3|AAO91713.1|  126|Caenorhabditis elegans Hypothetical
          protein F56A11.7 protein.
          Length = 126

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 30 SLTVVPQQASIAASTGPSQPTHRASWSYGTQLH 62
          +LT V Q   +++  G ++  HR  WS GTQLH
Sbjct: 54 TLTCVLQDLYLSSCHG-NEYGHRDLWSVGTQLH 85


>Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical
           protein T21B6.3 protein.
          Length = 821

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 67  PQQFIAAHDRIINRSIQAQSRLTADFEQHWRHARSIQAQPRFTAGFEQ 114
           PQ F   H+  + R  + Q +     +Q  +  ++ Q QP+ T  F Q
Sbjct: 280 PQSFSGTHELHLQRQREQQQQQQQQQQQQQQRQQNPQQQPQQTTQFGQ 327


>L13200-7|AAA28189.1|  206|Caenorhabditis elegans
          Prion-like-(q/n-rich)-domain-bearingprotein protein 96
          protein.
          Length = 206

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 36 QQASIAASTGPSQPTHRASWSYGTQLHCLITP 67
          QQ        P+QPTH    SY T L   +TP
Sbjct: 64 QQFQSPQQQAPTQPTHPDRESYQTALPANVTP 95


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.125    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,979,138
Number of Sequences: 27539
Number of extensions: 100333
Number of successful extensions: 244
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 4
length of query: 128
length of database: 12,573,161
effective HSP length: 74
effective length of query: 54
effective length of database: 10,535,275
effective search space: 568904850
effective search space used: 568904850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)