GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002438-TA|BGIBMGA002438-PA|undefined
         (128 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   2.5  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   5.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   5.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   10.0 

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 20  NPRILADKSTSLTVVPQQASIAASTGPSQ 48
           NPRI +  S+S +  P     AA+  PS+
Sbjct: 514 NPRIASAPSSSTSSSPPAKGAAAAGQPSK 542


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 35  PQQASIAASTGPSQPTHRASWSY--GTQLHCLITPQQFIAA 73
           PQ +  +AST P+  T  + + Y      H     QQ +AA
Sbjct: 69  PQHSGSSASTSPAARTTSSMYPYVSAAAAHHHHQQQQAVAA 109


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 68  QQFIAAHDRIINRSIQAQSRLTADFEQHWRHARSIQ 103
           QQ + AH++ +    Q QS+  +   Q   H R  Q
Sbjct: 192 QQHLQAHEQHMMYQQQQQSQAASQQSQPGMHPRQQQ 227


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 68  QQFIAAHDRIINRSIQAQSRLTADF-EQHWRHARSIQAQPRFTAGFEQHWPLQ 119
           QQ + A  +   +  Q Q  + A   +Q  +  +  Q Q +     +QHWP++
Sbjct: 415 QQQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQQQQQQHWPME 467


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
          acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 6  LALSERRIKNSGYHNPRILAD 26
          +AL+   + N G H  R+L D
Sbjct: 10 IALAASGLVNGGSHEKRLLND 30


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.125    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,255
Number of Sequences: 429
Number of extensions: 1140
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 128
length of database: 140,377
effective HSP length: 51
effective length of query: 77
effective length of database: 118,498
effective search space:  9124346
effective search space used:  9124346
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)