GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002437-TA|BGIBMGA002437-PA|undefined
         (163 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    26   0.18 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           25   0.42 
DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    24   0.73 
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    24   0.73 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   0.97 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   0.97 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   0.97 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   0.97 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   0.97 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   0.97 
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    23   0.97 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   0.97 
DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    23   1.3  
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    23   1.3  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    22   2.2  
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    22   2.2  
DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory pro...    21   5.1  
DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    21   6.8  
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    20   9.0  
DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    20   9.0  
DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory pro...    20   9.0  
AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical pro...    20   9.0  

>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 25.8 bits (54), Expect = 0.18
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 31  NMSNTWNEFVSEYDP 45
           N  N WN+ V++YDP
Sbjct: 106 NYRNEWNQLVAKYDP 120


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.42
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 78  RLSPSH-SAPTTRWPVAVEQLINKVDTEISRIATTLQPDIPTAVETREADDTYEAETSRD 136
           RL+P+H  +P T+   +      K     S        D+ T      +       ++ +
Sbjct: 80  RLAPTHLQSPNTQTHPSASC---KYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSN 136

Query: 137 VTSSSGLRPPVLTAVSPP 154
            T SSGL  P+  + SPP
Sbjct: 137 ATKSSGLTSPLSVSTSPP 154


>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
           protein 16 protein.
          Length = 126

 Score = 23.8 bits (49), Expect = 0.73
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 28  LHENMSNTWNEFVSEYDP 45
           L EN  N W E  S++DP
Sbjct: 90  LIENKPNWWQELESKFDP 107


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
           protein 9 protein.
          Length = 126

 Score = 23.8 bits (49), Expect = 0.73
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 28  LHENMSNTWNEFVSEYDP 45
           L EN  N W E  S++DP
Sbjct: 90  LIENKPNWWQELESKFDP 107


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 0.97
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 133 TSRDVTSSSGLRPPVLTAVSPP 154
           ++ + T SSGL  P+  + SPP
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPP 154


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 0.97
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 133 TSRDVTSSSGLRPPVLTAVSPP 154
           ++ + T SSGL  P+  + SPP
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPP 154


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 23.4 bits (48), Expect = 0.97
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 133 TSRDVTSSSGLRPPVLTAVSPP 154
           ++ + T SSGL  P+  + SPP
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPP 154


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 0.97
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 133 TSRDVTSSSGLRPPVLTAVSPP 154
           ++ + T SSGL  P+  + SPP
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPP 154


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 23.4 bits (48), Expect = 0.97
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 133 TSRDVTSSSGLRPPVLTAVSPP 154
           ++ + T SSGL  P+  + SPP
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPP 154


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 23.4 bits (48), Expect = 0.97
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 133 TSRDVTSSSGLRPPVLTAVSPP 154
           ++ + T SSGL  P+  + SPP
Sbjct: 89  SNSNATKSSGLTSPLSVSTSPP 110


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 23.4 bits (48), Expect = 0.97
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 133 TSRDVTSSSGLRPPVLTAVSPP 154
           ++ + T SSGL  P+  + SPP
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPP 154


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 0.97
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 133 TSRDVTSSSGLRPPVLTAVSPP 154
           ++ + T SSGL  P+  + SPP
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPP 154


>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 28  LHENMSNTWNEFVSEYDP 45
           L +N  + WNE  ++YDP
Sbjct: 91  LIKNKRDWWNELEAKYDP 108


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 28  LHENMSNTWNEFVSEYDP 45
           L +N  + WNE  ++YDP
Sbjct: 91  LIKNKRDWWNELEAKYDP 108


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 6/20 (30%), Positives = 13/20 (65%)

Query: 26  EKLHENMSNTWNEFVSEYDP 45
           + L++N  + W +  ++YDP
Sbjct: 90  QHLYKNKQDWWKQLEAKYDP 109


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 28  LHENMSNTWNEFVSEYDP 45
           L  N    W E  ++YDP
Sbjct: 88  LSHNKQQMWKELTAKYDP 105


>DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory
           protein 14 protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 28  LHENMSNTWNEFVSEYDP 45
           L +N  N W E  +++DP
Sbjct: 90  LIKNKPNWWQELEAKFDP 107


>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 28  LHENMSNTWNEFVSEYD 44
           L +N  + WNE  ++YD
Sbjct: 93  LIDNKRDWWNELEAKYD 109


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 28  LHENMSNTWNEFVSEYDP 45
           L +N  + W +  ++YDP
Sbjct: 88  LIDNKPDMWKQLEAKYDP 105


>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
           protein 17 protein.
          Length = 124

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 28  LHENMSNTWNEFVSEYDP 45
           L +N  + W E   +YDP
Sbjct: 89  LIKNKPSWWQELQEKYDP 106


>DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory
           protein 2 protein.
          Length = 122

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 28  LHENMSNTWNEFVSEYDP 45
           L +  ++ W + +S YDP
Sbjct: 90  LIKERNSDWQQLISVYDP 107


>AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical
           protein protein.
          Length = 122

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 28  LHENMSNTWNEFVSEYDP 45
           L +  ++ W + +S YDP
Sbjct: 90  LIKERNSDWQQLISVYDP 107


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.125    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,972
Number of Sequences: 317
Number of extensions: 1477
Number of successful extensions: 22
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of query: 163
length of database: 114,650
effective HSP length: 52
effective length of query: 111
effective length of database: 98,166
effective search space: 10896426
effective search space used: 10896426
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.0 bits)
S2: 40 (20.2 bits)