GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002437-TA|BGIBMGA002437-PA|undefined
         (163 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    28   0.79 
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    27   1.8  
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    26   3.2  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   4.2  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    25   5.6  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   5.6  
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family...    24   9.7  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 27.9 bits (59), Expect = 0.79
 Identities = 15/51 (29%), Positives = 24/51 (47%)

Query: 8   QSPLTKLFPTPSAIPQLWEKLHENMSNTWNEFVSEYDPVESPRALKSMPGM 58
           QSP   L      + + +  L E   N  N+F   +D +E+ R L S+P +
Sbjct: 589 QSPAFTLLRDILLLLKDYADLSEPWENVANQFTVSFDELENIRVLNSLPSL 639


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 81  PSHSAPTTRWPVAVEQLINKVDTEISRIATTLQPDIPTAVETREADDTYEAETSRDVTSS 140
           P+ S  +  +P +     +      S +A+TL+P          +  +    TS  + S+
Sbjct: 378 PNPSVASPAFPNSSTSNPSTAPASASPLASTLKPSTANDTNGSSSSSSSNPRTSSPLASN 437

Query: 141 SGLRPPVLTAVSPPPL 156
           +  +PPV    SPP L
Sbjct: 438 AENKPPV-AQQSPPVL 452


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 6/61 (9%)

Query: 4   EYTQQSPLTKLFPTPSAIPQLWEKLHENMSNTWNEFVSEYDPVESPRALKSMPGMSLTVI 63
           E+T+Q  L KL        + WEKL +++ N +N+ + ++D     R L  + G +  ++
Sbjct: 445 EFTRQLFLHKLTSR-----EWWEKLSDDLRNVFNQDL-DFDEKMFSRQLSLVKGQAYNIV 498

Query: 64  Q 64
           +
Sbjct: 499 E 499


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 112  LQPDIPTAVETREADDTYEAETSRDVTSSSGLRPPVLTAVSPPP 155
            ++P+ PT  +   A         R  +SSSG+  P LT V+ PP
Sbjct: 1001 IKPNKPTKPDHLVAPRVKPLLPPRSGSSSSGVPAPNLTPVNVPP 1044


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 14/53 (26%), Positives = 22/53 (41%)

Query: 111 TLQPDIPTAVETREADDTYEAETSRDVTSSSGLRPPVLTAVSPPPLRRRMTHH 163
           T   +IPTA++ +   +   + T  D         P L +V   P  R+  HH
Sbjct: 2   TQNHNIPTAIQIQNPINNNVSVTISDQLPKPSANNPNLLSVDTRPTHRKGHHH 54


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 16  PTPSAIPQLWE--KLHENMSNTWNEFVS 41
           P    IP  W   + H N+ + WNEF+S
Sbjct: 247 PIKIGIPIDWNVSETHPNVLDKWNEFIS 274


>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 21  IPQLWEKLHENMSNTW 36
           + QLW+KL   M N W
Sbjct: 349 VSQLWDKLERWMENRW 364


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.125    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 756,851
Number of Sequences: 5004
Number of extensions: 28114
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 7
length of query: 163
length of database: 2,362,478
effective HSP length: 68
effective length of query: 95
effective length of database: 2,022,206
effective search space: 192109570
effective search space used: 192109570
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 50 (24.2 bits)