GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002437-TA|BGIBMGA002437-PA|undefined
         (163 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    28   0.053
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   2.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   2.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   3.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   3.5  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   4.6  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   4.6  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   4.6  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   6.1  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 27.9 bits (59), Expect = 0.053
 Identities = 15/61 (24%), Positives = 26/61 (42%)

Query: 9   SPLTKLFPTPSAIPQLWEKLHENMSNTWNEFVSEYDPVESPRALKSMPGMSLTVIQYGET 68
           +P T +   P  IP+     HEN   T N+      P     ++K+ PG  + + +  + 
Sbjct: 851 TPSTGMMYKPFLIPEQTSISHENNQPTMNKCSDRKRPASQATSVKAEPGSIMAMSESSKK 910

Query: 69  V 69
           V
Sbjct: 911 V 911



 Score = 24.6 bits (51), Expect = 0.50
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 104 EISRIATTLQPDIPTAVETREADDTYEAETSRDVTSSSGLRPPVLTAVSPPP 155
           E+SR +T  Q   PT V T     + +  T     ++  L  P+  ++ PPP
Sbjct: 719 EVSRTSTAGQ--FPTNVATTVTSMSIDQSTVIQTGANVNLWQPLSVSIPPPP 768


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)

Query: 149 TAVSPPPLRRR 159
           T VSPPP +RR
Sbjct: 900 TVVSPPPTKRR 910


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)

Query: 149 TAVSPPPLRRR 159
           T VSPPP +RR
Sbjct: 938 TVVSPPPTKRR 948


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 4/42 (9%)

Query: 37 NEFVSEYDPVESPRALKSMPGMSLTVIQYGETVRLAVMADAR 78
          NE +S Y+ +E P A +S P      +++G T++  +  D +
Sbjct: 60 NELLSSYNTLERPVANESEP----LEVKFGITLQQIIDVDEK 97


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 4/42 (9%)

Query: 37 NEFVSEYDPVESPRALKSMPGMSLTVIQYGETVRLAVMADAR 78
          NE +S Y+ +E P A +S P      +++G T++  +  D +
Sbjct: 60 NELLSSYNTLERPVANESEP----LEVKFGITLQQIIDVDEK 97


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 28  LHENMSNTWNEFVSEYDP 45
           L EN    W+   ++YDP
Sbjct: 94  LVENKPELWDSLANKYDP 111


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 28  LHENMSNTWNEFVSEYDP 45
           L EN    W+   ++YDP
Sbjct: 94  LVENKPELWDSLANKYDP 111


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 28  LHENMSNTWNEFVSEYDP 45
           L EN    W+   ++YDP
Sbjct: 94  LVENKPELWDSLANKYDP 111


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 31  NMSNTWNEFVSEYDPV 46
           N  N+W+  V  Y+PV
Sbjct: 151 NKINSWDNVVVAYEPV 166


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.125    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,239
Number of Sequences: 429
Number of extensions: 1876
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 163
length of database: 140,377
effective HSP length: 53
effective length of query: 110
effective length of database: 117,640
effective search space: 12940400
effective search space used: 12940400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)
S2: 41 (20.6 bits)