GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002436-TA|BGIBMGA002436-PA|undefined
         (268 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    30   0.30 
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   3.7  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   4.9  
SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce...    26   6.5  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    25   8.6  

>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 125 VSCWGNYA---WDVNVRFRFENHFIVANAVYRGRPVTESNIQEYISDIVSKYFSPDQPPW 181
           V+ WG +    W V    +  NH+   N     + +TE   Q Y  D +     P  P W
Sbjct: 217 VALWGAFFIQFWRVQ-EHKLTNHWSTVNCQSLAKSMTEFKPQSYRVDSLLGTARPYYPQW 275

Query: 182 QYIIIPCAATEPKYYI 197
           + I+    A  P + I
Sbjct: 276 EIIVRSTIANVPLFLI 291


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 6/47 (12%)

Query: 86  LAVKGNPNVDEIKG------KLIEHVIDKRDRNGQFMFPRLRHLLVS 126
           L V+ N NVDEI+        +++ + D RDR  +   PR+ HL V+
Sbjct: 582 LTVENNVNVDEIENYEEVRDSILKKLSDLRDRPKRSEKPRIYHLDVA 628


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/44 (27%), Positives = 23/44 (52%)

Query: 165 YISDIVSKYFSPDQPPWQYIIIPCAATEPKYYILVRVHHLLLSG 208
           Y   I +  F  + PP  +I+I  +++    Y L  ++H+ +SG
Sbjct: 535 YNKMIRAPLFKHEVPPTDFILIRNSSSYGSKYYLKNINHMFVSG 578


>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 83  NVLLAVKGNPNVDEIKGKLIEHVIDKRDRNGQFMFPRLRHL 123
           ++LL   G  N D++   +I H++    +N    F  L HL
Sbjct: 61  SMLLTFAGKSNFDKLHNSIIFHILKLMQKNND-TFSALHHL 100


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 216 DLLLVEQLKQTDRMAQEYTQQSPLTKLFPTPSAIPQLWESF 256
           D + V  + Q D  A     Q PL+ +  +PS    LW SF
Sbjct: 80  DKVFVLDIVQHDYYASIQCDQDPLSSISWSPSGELLLWSSF 120


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.139    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,177,895
Number of Sequences: 5004
Number of extensions: 46662
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 161
Number of HSP's gapped (non-prelim): 5
length of query: 268
length of database: 2,362,478
effective HSP length: 72
effective length of query: 196
effective length of database: 2,002,190
effective search space: 392429240
effective search space used: 392429240
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 53 (25.4 bits)