GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002436-TA|BGIBMGA002436-PA|undefined
         (268 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0854 - 32477994-32478161,32478689-32478826,32479225-324794...    35   0.079
01_06_0853 - 32468690-32468857,32469398-32469535,32469930-324701...    35   0.079
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     31   0.73 
05_07_0064 + 27440520-27440942,27442387-27442998,27443109-274431...    30   1.7  
10_08_0003 - 13992276-13992311,13992461-13992598,13992682-139928...    30   2.2  
03_01_0439 + 3409422-3409795,3410672-3410897,3411004-3411282,341...    29   3.9  

>01_06_0854 -
           32477994-32478161,32478689-32478826,32479225-32479440,
           32479580-32479656,32481144-32481555,32482248-32482850,
           32482954-32483229
          Length = 629

 Score = 34.7 bits (76), Expect = 0.079
 Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 4/101 (3%)

Query: 117 FPRLRHLLVSC--WGNYAWDVNVRFRFENHFIVANAVYRGRPVT-ESNIQEYISDIVSKY 173
           +PR R + V+    GN  W V      ++H I             +  +++Y++ + +K 
Sbjct: 85  YPRFRSIQVTDEDGGNPRW-VRTTLNVDDHIIYPELDMDAVAADPDKAVEDYVASLSTKP 143

Query: 174 FSPDQPPWQYIIIPCAATEPKYYILVRVHHLLLSGAKSINI 214
               +P W++ ++    +E      +RVHH L  G   + +
Sbjct: 144 MDESRPLWEFHVLDFPTSEAAATTAIRVHHSLGDGMSLLTL 184


>01_06_0853 -
           32468690-32468857,32469398-32469535,32469930-32470145,
           32470280-32470356,32470483-32470549,32471264-32471866,
           32471971-32472258
          Length = 518

 Score = 34.7 bits (76), Expect = 0.079
 Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 4/101 (3%)

Query: 117 FPRLRHLLVSC--WGNYAWDVNVRFRFENHFIVANAVYRGRPVT-ESNIQEYISDIVSKY 173
           +PR R + V+    GN  W V      ++H I             +  +++Y++ + +K 
Sbjct: 89  YPRFRSIQVTDEDGGNPRW-VRTTVNLDDHIIYPELDMDAVAADPDKAVEDYVASLSTKP 147

Query: 174 FSPDQPPWQYIIIPCAATEPKYYILVRVHHLLLSGAKSINI 214
               +P W++ ++    +E      +RVHH L  G   + +
Sbjct: 148 MDESRPLWEFHVLDFPTSEAAATTAIRVHHSLGDGMSLLTL 188


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 182  QYIIIPCAATEPKYYILVRVHHLLLSGAKSINIGD 216
            +Y++I C +T+PKY     +HH  L    SI + D
Sbjct: 5111 KYLLILCYSTKPKYQPKASIHHKGLKEDSSIEVDD 5145


>05_07_0064 +
           27440520-27440942,27442387-27442998,27443109-27443175,
           27443271-27443362,27443493-27443708,27443869-27444006,
           27444325-27444474
          Length = 565

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/53 (22%), Positives = 28/53 (52%)

Query: 162 IQEYISDIVSKYFSPDQPPWQYIIIPCAATEPKYYILVRVHHLLLSGAKSINI 214
           I++Y+S + ++     +P W+  ++    +E    + VR+HH L  G   +++
Sbjct: 183 IEDYMSTLSTQPMDHSRPLWELHVLDFPTSEAAATVAVRMHHSLGDGISLLSL 235


>10_08_0003 -
           13992276-13992311,13992461-13992598,13992682-13992852,
           13992926-13992989,13993404-13993552,13993700-13993753,
           13993894-13994034,13994134-13994412,13994518-13994743,
           13995328-13995734
          Length = 554

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 2/25 (8%)

Query: 83  NVLLAVKGNPNVDEIKGKLIEHVID 107
           N+L+AV G P++ +I G  IEHVID
Sbjct: 229 NILIAVGGRPSMPDIPG--IEHVID 251


>03_01_0439 +
           3409422-3409795,3410672-3410897,3411004-3411282,
           3411374-3411550,3411653-3411706,3411806-3411954,
           3412534-3412597,3412670-3412840,3412922-3413059,
           3413180-3413215
          Length = 555

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 2/25 (8%)

Query: 83  NVLLAVKGNPNVDEIKGKLIEHVID 107
           N+L+AV G P++  I G  IEHVID
Sbjct: 218 NILIAVGGRPSMPNIPG--IEHVID 240


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.325    0.139    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,272,214
Number of Sequences: 37544
Number of extensions: 278200
Number of successful extensions: 716
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 711
Number of HSP's gapped (non-prelim): 7
length of query: 268
length of database: 14,793,348
effective HSP length: 81
effective length of query: 187
effective length of database: 11,752,284
effective search space: 2197677108
effective search space used: 2197677108
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)