GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002436-TA|BGIBMGA002436-PA|undefined
         (268 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF458028-1|AAM74524.1|  402|Homo sapiens mutant I beta-1,6-N-ace...    33   1.4  
BC117485-1|AAI17486.1|  274|Homo sapiens TatD DNase domain conta...    32   1.8  
BC113638-1|AAI13639.1|  274|Homo sapiens TatD DNase domain conta...    32   1.8  
BC048115-1|AAH48115.1|  275|Homo sapiens TATDN3 protein protein.       32   1.8  
BC130524-1|AAI30525.1|  402|Homo sapiens glucosaminyl (N-acetyl)...    31   4.2  
AY435147-1|AAR95648.1|  402|Homo sapiens I-branching beta-1,6-ac...    31   4.2  
AL358777-1|CAI13997.1|  308|Homo sapiens protein ( Human DNA seq...    31   4.2  
AF458030-1|AAM73870.1|  402|Homo sapiens mutant I beta-1,6-N-ace...    31   4.2  
AF458029-1|AAM73869.1|  402|Homo sapiens mutant I beta-1,6-N-ace...    31   4.2  
AF458027-1|AAM73867.1|  402|Homo sapiens mutant I beta-1,6-N-ace...    31   4.2  
AF458026-1|AAM73866.1|  402|Homo sapiens I beta-1,6-N-acetylgluc...    31   4.2  
AB078433-1|BAC66782.1|  402|Homo sapiens beta-1,6-N-acetylglucos...    31   4.2  

>AF458028-1|AAM74524.1|  402|Homo sapiens mutant I
           beta-1,6-N-acetylglucosaminyltransferase C form protein.
          Length = 402

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 141 FENHFIVA---NAVYRGRPVTESNIQEYISDIVSKYFSPDQPPWQYIIIPCAATEPKYYI 197
           F+N FI +   + VY G    ++++   + D+V+      + PW+Y+I  C    P    
Sbjct: 147 FQNAFIASKTESVVYAGISRLQADLN-CLKDLVAS-----EVPWKYVINTCGQDFPLKTN 200

Query: 198 LVRVHHLLLSGAKSINIGDLLLVEQLKQTDRMAQEYTQQ 236
              V HL     K+I  G L     +KQT  + QE+T +
Sbjct: 201 REIVQHLKGFKGKNITPGVLPPDHAIKQTKYVHQEHTDK 239


>BC117485-1|AAI17486.1|  274|Homo sapiens TatD DNase domain
           containing 3 protein.
          Length = 274

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 94  VDEIKGKLIEHVIDKRDRNGQFMFPRLRHLL 124
           + ++KG  +E VI+   +N   +FP+LRHLL
Sbjct: 242 IAQVKGISVEEVIEVTTQNALKLFPKLRHLL 272


>BC113638-1|AAI13639.1|  274|Homo sapiens TatD DNase domain
           containing 3 protein.
          Length = 274

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 94  VDEIKGKLIEHVIDKRDRNGQFMFPRLRHLL 124
           + ++KG  +E VI+   +N   +FP+LRHLL
Sbjct: 242 IAQVKGISVEEVIEVTTQNALKLFPKLRHLL 272


>BC048115-1|AAH48115.1|  275|Homo sapiens TATDN3 protein protein.
          Length = 275

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 94  VDEIKGKLIEHVIDKRDRNGQFMFPRLRHLL 124
           + ++KG  +E VI+   +N   +FP+LRHLL
Sbjct: 243 IAQVKGISVEEVIEVTTQNALKLFPKLRHLL 273


>BC130524-1|AAI30525.1|  402|Homo sapiens glucosaminyl (N-acetyl)
           transferase 2, I-branching enzyme (I blood group)
           protein.
          Length = 402

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 141 FENHFIVA---NAVYRGRPVTESNIQEYISDIVSKYFSPDQPPWQYIIIPCAATEPKYYI 197
           F+N FI +   + VY G    ++++   + D+V+      + PW+Y+I  C    P    
Sbjct: 147 FQNAFIASKTESVVYAGISRLQADLN-CLKDLVAS-----EVPWKYVINTCGQDFPLKTN 200

Query: 198 LVRVHHLLLSGAKSINIGDLLLVEQLKQTDRMAQEYTQQ 236
              V HL     K+I  G L     +K+T  + QE+T +
Sbjct: 201 REIVQHLKGFKGKNITPGVLPPDHAIKRTKYVHQEHTDK 239


>AY435147-1|AAR95648.1|  402|Homo sapiens I-branching
           beta-1,6-acetylglucosaminyltransferase family
           polypeptide 3 protein.
          Length = 402

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 141 FENHFIVA---NAVYRGRPVTESNIQEYISDIVSKYFSPDQPPWQYIIIPCAATEPKYYI 197
           F+N FI +   + VY G    ++++   + D+V+      + PW+Y+I  C    P    
Sbjct: 147 FQNAFIASKTESVVYAGISRLQADLN-CLKDLVAS-----EVPWKYVINTCGQDFPLKTN 200

Query: 198 LVRVHHLLLSGAKSINIGDLLLVEQLKQTDRMAQEYTQQ 236
              V HL     K+I  G L     +K+T  + QE+T +
Sbjct: 201 REIVQHLKGFKGKNITPGVLPPDHAIKRTKYVHQEHTDK 239


>AL358777-1|CAI13997.1|  308|Homo sapiens protein ( Human DNA
           sequence from clone RP11-421M1 on chromosome 6. ).
          Length = 308

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 141 FENHFIVA---NAVYRGRPVTESNIQEYISDIVSKYFSPDQPPWQYIIIPCAATEPKYYI 197
           F+N FI +   + VY G    ++++   + D+V+      + PW+Y+I  C    P    
Sbjct: 147 FQNAFIASKTESVVYAGISRLQADLN-CLKDLVAS-----EVPWKYVINTCGQDFPLKTN 200

Query: 198 LVRVHHLLLSGAKSINIGDLLLVEQLKQTDRMAQEYTQQ 236
              V HL     K+I  G L     +K+T  + QE+T +
Sbjct: 201 REIVQHLKGFKGKNITPGVLPPDHAIKRTKYVHQEHTDK 239


>AF458030-1|AAM73870.1|  402|Homo sapiens mutant I
           beta-1,6-N-acetylglucosaminyltransferase C form protein.
          Length = 402

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 141 FENHFIVA---NAVYRGRPVTESNIQEYISDIVSKYFSPDQPPWQYIIIPCAATEPKYYI 197
           F+N FI +   + VY G    ++++   + D+V+      + PW+Y+I  C    P    
Sbjct: 147 FQNAFIASKTESVVYAGISRLQADLN-CLKDLVAS-----EVPWKYVINTCGQDFPLKTN 200

Query: 198 LVRVHHLLLSGAKSINIGDLLLVEQLKQTDRMAQEYTQQ 236
              V HL     K+I  G L     +K+T  + QE+T +
Sbjct: 201 REIVQHLKGFKGKNITPGVLPPDHAIKRTKYVHQEHTDK 239


>AF458029-1|AAM73869.1|  402|Homo sapiens mutant I
           beta-1,6-N-acetylglucosaminyltransferase C form protein.
          Length = 402

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 141 FENHFIVA---NAVYRGRPVTESNIQEYISDIVSKYFSPDQPPWQYIIIPCAATEPKYYI 197
           F+N FI +   + VY G    ++++   + D+V+      + PW+Y+I  C    P    
Sbjct: 147 FQNAFIASKTESVVYAGISRLQADLN-CLKDLVAS-----EVPWKYVINTCGQDFPLKTN 200

Query: 198 LVRVHHLLLSGAKSINIGDLLLVEQLKQTDRMAQEYTQQ 236
              V HL     K+I  G L     +K+T  + QE+T +
Sbjct: 201 REIVQHLKGFKGKNITPGVLPPDHAIKRTKYVHQEHTDK 239


>AF458027-1|AAM73867.1|  402|Homo sapiens mutant I
           beta-1,6-N-acetylglucosaminyltransferase C form protein.
          Length = 402

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 141 FENHFIVA---NAVYRGRPVTESNIQEYISDIVSKYFSPDQPPWQYIIIPCAATEPKYYI 197
           F+N FI +   + VY G    ++++   + D+V+      + PW+Y+I  C    P    
Sbjct: 147 FQNAFIASKTESVVYAGISRLQTDLN-CLKDLVAS-----EVPWKYVINTCGQDFPLKTN 200

Query: 198 LVRVHHLLLSGAKSINIGDLLLVEQLKQTDRMAQEYTQQ 236
              V HL     K+I  G L     +K+T  + QE+T +
Sbjct: 201 REIVQHLKGFKGKNITPGVLPPDHAIKRTKYVHQEHTDK 239


>AF458026-1|AAM73866.1|  402|Homo sapiens I
           beta-1,6-N-acetylglucosaminyltransferase C form protein.
          Length = 402

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 141 FENHFIVA---NAVYRGRPVTESNIQEYISDIVSKYFSPDQPPWQYIIIPCAATEPKYYI 197
           F+N FI +   + VY G    ++++   + D+V+      + PW+Y+I  C    P    
Sbjct: 147 FQNAFIASKTESVVYAGISRLQADLN-CLKDLVAS-----EVPWKYVINTCGQDFPLKTN 200

Query: 198 LVRVHHLLLSGAKSINIGDLLLVEQLKQTDRMAQEYTQQ 236
              V HL     K+I  G L     +K+T  + QE+T +
Sbjct: 201 REIVQHLKGFKGKNITPGVLPPDHAIKRTKYVHQEHTDK 239


>AB078433-1|BAC66782.1|  402|Homo sapiens
           beta-1,6-N-acetylglucosaminyltransferase 3 protein.
          Length = 402

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 141 FENHFIVA---NAVYRGRPVTESNIQEYISDIVSKYFSPDQPPWQYIIIPCAATEPKYYI 197
           F+N FI +   + VY G    ++++   + D+V+      + PW+Y+I  C    P    
Sbjct: 147 FQNAFIASKTESVVYAGISRLQADLN-CLKDLVAS-----EVPWKYVINTCGQDFPLKTN 200

Query: 198 LVRVHHLLLSGAKSINIGDLLLVEQLKQTDRMAQEYTQQ 236
              V HL     K+I  G L     +K+T  + QE+T +
Sbjct: 201 REIVQHLKGFKGKNITPGVLPPDHAIKRTKYVHQEHTDK 239


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.325    0.139    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,419,967
Number of Sequences: 224733
Number of extensions: 1423571
Number of successful extensions: 3041
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3037
Number of HSP's gapped (non-prelim): 12
length of query: 268
length of database: 73,234,838
effective HSP length: 89
effective length of query: 179
effective length of database: 53,233,601
effective search space: 9528814579
effective search space used: 9528814579
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 64 (29.9 bits)