GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002436-TA|BGIBMGA002436-PA|undefined
         (268 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    26   0.31 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.7  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 103 EHVIDKRDRNGQFMFPRLRHLLVSCWGN 130
           + V +  DRNG   F  L  L + CW +
Sbjct: 308 QSVAEVMDRNGVLFFGLLSDLAIGCWNS 335


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 111 RNGQFMFPRLRHLLVSCWG 129
           RNG   +   RHL++SC G
Sbjct: 170 RNGTVNYLMRRHLILSCQG 188


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 111 RNGQFMFPRLRHLLVSCWG 129
           RNG   +   RHL++SC G
Sbjct: 170 RNGTVNYLMRRHLILSCQG 188


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 111 RNGQFMFPRLRHLLVSCWG 129
           RNG   +   RHL++SC G
Sbjct: 221 RNGTVNYLMRRHLILSCQG 239


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 111 RNGQFMFPRLRHLLVSCWG 129
           RNG   +   RHL++SC G
Sbjct: 170 RNGTVNYLMRRHLILSCQG 188


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 143 NHFIVANAVYRGRPVTESNIQEYISDIVSK 172
           N F+     Y G P   S + E +SD+  +
Sbjct: 415 NRFLGGIGGYNGLPTVMSGLDESLSDVTPR 444


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 209 AKSINIGDLLLVEQLKQTDRMAQEYTQQSPLTKLFPTPSAIP 250
           A+S+  G  +  EQLK+TD +   Y  +   +   P  S  P
Sbjct: 707 ARSLMEGPRMTAEQLKRTD-IIHNYIMRGEASPRSPNASPSP 747


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 246 PSAIPQLWESFMKICRYMERIRF 268
           P  +  LW  F   C + E+I F
Sbjct: 350 PFFVVNLWSGFCSQCIWQEKIVF 372


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.139    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,110
Number of Sequences: 429
Number of extensions: 3010
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 8
length of query: 268
length of database: 140,377
effective HSP length: 57
effective length of query: 211
effective length of database: 115,924
effective search space: 24459964
effective search space used: 24459964
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 43 (21.4 bits)