GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002435-TA|BGIBMGA002435-PA|undefined
         (488 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      26   0.68 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      26   0.68 
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    25   1.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   6.4  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.8 bits (54), Expect = 0.68
 Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 410 SYGDLYTGRISSKESVNGSRRSPG-LTGQSTDTDYSSDGGYKSLPSSINCSTSP 462
           S GD +T      ES+N S  SPG L+G S+ T   S GG   LPS      SP
Sbjct: 662 SMGDAHTPPEDDAESLNQSISSPGALSGLSSLT---SPGG-MVLPSPSTSVASP 711


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 25.8 bits (54), Expect = 0.68
 Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 410 SYGDLYTGRISSKESVNGSRRSPG-LTGQSTDTDYSSDGGYKSLPSSINCSTSP 462
           S GD +T      ES+N S  SPG L+G S+ T   S GG   LPS      SP
Sbjct: 554 SMGDAHTPPEDDAESLNQSISSPGALSGLSSLT---SPGG-MVLPSPSTSVASP 603


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 442 DYSSDGGYKSLPSSINCSTSPKKVSGIPRRSIEQK 476
           DYSS+     LP +I+C++ PK     P +   +K
Sbjct: 76  DYSSEYEKCDLPFNIDCTSRPKLQEPQPSQHCPRK 110


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 9/46 (19%), Positives = 23/46 (50%)

Query: 258  ATFRDYMNKKMTLAPTSIWNEQASTRKLSSLSSEAQKSKRPVTNGT 303
            A+  ++M+   T  P++ W+   ++   ++ ++    + RP T  T
Sbjct: 1025 ASSTEHMHPDWTTKPSTWWSSTTTSPWWTTTTTRRTTTTRPTTTST 1070


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.126    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,824
Number of Sequences: 317
Number of extensions: 3742
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 4
length of query: 488
length of database: 114,650
effective HSP length: 59
effective length of query: 429
effective length of database: 95,947
effective search space: 41161263
effective search space used: 41161263
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 45 (22.2 bits)