Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002435-TA|BGIBMGA002435-PA|undefined
(488 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 32 0.16
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 31 0.36
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 31 0.48
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ... 29 1.5
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 29 1.9
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe... 29 1.9
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 29 1.9
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 2.5
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 28 3.4
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 4.4
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 27 4.4
SPAC4G9.11c |cmb1||cytosine-mismatch binding protein 1|Schizosac... 27 5.9
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 27 7.8
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 27 7.8
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 27 7.8
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 32.3 bits (70), Expect = 0.16
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 227 ITYKDKCTSFVVDTISKTKYFATELSRSEWIATFRDYMNKKMTLAPTSIWNEQASTRKLS 286
+TYK +V + + K+ + L SEWIA + +N++ P W+ + R+ S
Sbjct: 191 LTYKQHFPDVIVGSYTYRKHGSVRLD-SEWIAATKAILNRQSEDVPLETWSSEKRKRQSS 249
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 31.1 bits (67), Expect = 0.36
Identities = 68/312 (21%), Positives = 118/312 (37%), Gaps = 17/312 (5%)
Query: 183 STTLTSSDNSGLVRFIVTSLKTFIRT-LHSTMTVLYIAPITPKNFITYKDKCTSFVVDTI 241
ST +TSS I +S T + S+ T+ PIT + + TS
Sbjct: 3273 STPITSSTVVNTSTPITSSTVVNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSTALNT 3332
Query: 242 SKTKYFATELSRSEWIATFRDYMNKKMTLAPTSIWNEQ----ASTRKLSSL---SSEAQK 294
S T ++ + S T +N + +S+ N +ST SS SS A
Sbjct: 3333 S-TPITSSSVLNSSTAITSSSILNSSTPVTSSSVLNSSTPITSSTVVNSSTPITSSTALN 3391
Query: 295 SKRPVTNGTVKCQCGARQANGLANGDDVHTDRRTDSVHLRTNSRVGTKYLQALAGSTDKR 354
+ P+T+ +V ++ + N + T S L T++ + + + +
Sbjct: 3392 TSTPITSSSVLNSSTPITSSTVVNS----STPITSSTALNTSTPITSSTVVNSSTPITSS 3447
Query: 355 YIKRDSSLGEKSERKPSLYTARSRSIENFHNQLTTADRITKQIVIEEMPLVKHHTSYGDL 414
+ S+ S S S S+ N ++++ IT +VI ++ + +S
Sbjct: 3448 SVLNSSTAIASSSILNSSTPITSSSVLNSSTPISSSTVITSSVVIGSSSVLSYASSIVSS 3507
Query: 415 YTGRISSKESVNGSRRSPGLTGQSTDTDYSSDGGYKSLPSSINCSTSPKKVSGIPRRSIE 474
+ S S G S TG S+ + S +G S+ SS S+SP +SG S +
Sbjct: 3508 VSLNSSLLSSSGGFSSSAFSTGSSSFSLTSENG---SVSSSSLVSSSP-VLSGYSESSFD 3563
Query: 475 QKILSTKHVKAS 486
+ V S
Sbjct: 3564 SSVFVPSSVSRS 3575
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 30.7 bits (66), Expect = 0.48
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 252 SRSEWIATFRDYMNKKMTLAPTSIWNEQASTRKLSSLSSEAQKSKRPVTN 301
S SE+ + +KK+T +PTS+ +++A+ LSS+S A S PVT+
Sbjct: 183 SASEFSGSSVTKASKKLTSSPTSVASKKAT---LSSVSKVASTSSLPVTS 229
>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 305
Score = 29.1 bits (62), Expect = 1.5
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 400 EEMPLVKHHTSYGDLYTGRISSKESVNGSRRSPGLTGQSTDTDYSSDGGYKSLPSSINCS 459
++ L+ +H++ + R ++ S + Q + Y++ S SS +
Sbjct: 125 DDRALMNYHSTVTPQTSERRRETRRHQNNQHSQQYSSQERSSSYNNFEDASSPQSSYHTP 184
Query: 460 TSPKKVSGIPRRSIEQKILSTKHVKAS 486
T +K + +PR+S + STKH S
Sbjct: 185 TKRRK-NAVPRKSSSPPLSSTKHAPQS 210
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 28.7 bits (61), Expect = 1.9
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 185 TLTSSDNSGLVRFIVTSLKTFIRTLHSTMTVLYIAPITPKNFITYKDKCTSFVVDTISKT 244
T T + ++ T +T + T + + T L +P N I+Y + +F+ + K+
Sbjct: 405 TTTHGSQVETLTYVTTLTETILTTTYDSHTFLTTITPSPSNSISYTN--NTFIPSSSIKS 462
Query: 245 K--YFATELSRSEWIATFRDYMNKKMTLAP---TSIWNEQASTRKLSSLSS 290
Y T S + ++ + + + P +S+ S K SSLSS
Sbjct: 463 SIVYSVTPTSAENYTSSEAFSTSSSLVVIPPVNSSLVTSSTSFTKFSSLSS 513
>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 28.7 bits (61), Expect = 1.9
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 394 TKQIVIEEMPLVKHHTSYGDLYTGRISSKESVNGSRRSPGLTGQSTDTDYSSDGGYKSLP 453
T + +E +P + H YG T ++ N + P + + + SSD S
Sbjct: 107 TYNLPLEMLPTINHVPYYGSAGTNALNGGPLSNSRKLIPKRSAKFSSMVGSSDTRCNSPT 166
Query: 454 SSINCSTSPKKVSGIPRRS--IEQKILST 480
++ +TSP +++ +S + +K+ ST
Sbjct: 167 TARGLATSPLQINPTTSKSPLLNKKLSST 195
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 28.7 bits (61), Expect = 1.9
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 313 ANGLANGDDVHTDRRTDSVHLRTNSRVGTKYLQALAGSTDKRYIKRDSSLGEKSERKPSL 372
ANG + GDDV+ D+ T S T + A S D R SS+ SE P+
Sbjct: 83 ANGGSTGDDVNATNANDATVPATVSSEVTHTSEGYADSND----SRPSSISNSSE-SPAP 137
Query: 373 YTARSRSIENFHNQLTTADRITKQIVIEEMPL 404
+ + S+ +N T+ + IT V E+ +
Sbjct: 138 INSATASMSPANN--TSGNNITSPNVRGELDM 167
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.3 bits (60), Expect = 2.5
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 348 AGSTDKRYIKRDSSLGEKSERKPSLYTARSRSIENFHNQLTT---ADRITKQIVIEEMPL 404
A DK+ + + L E SL T S S F N L+ I K ++ L
Sbjct: 2601 ASRKDKKILSPPNILDENLRLAASLITTDSCSSRTFQNALSVMFHLSSIPKAKILIGKEL 2660
Query: 405 VKHHTSYGDLYTGRIS 420
++H YG+ T +S
Sbjct: 2661 LRHGQEYGNSITNDLS 2676
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 39 SLPVRTARL-LQRSRTQTPSEGGISDGNASPAP 70
++P++TA L S+TQ PS G ++G P P
Sbjct: 277 AVPLKTALANLSASKTQAPSSGDSANGGLPPPP 309
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.5 bits (58), Expect = 4.4
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 392 RITKQIVIE-EMPLVKHHTSYGDLYTGRISSKESVNGSRRSPGL-TGQSTDTDYSSDGGY 449
RI +V E P++K +Y D G S V +RR L +S D +S G
Sbjct: 304 RIADNLVSEWSRPIIKRSANYRDRAVGVASFNPEVFQTRRRRDLAAAESNDDAQASRTGR 363
Query: 450 KSLPSSIN 457
+P SI+
Sbjct: 364 TVIPRSID 371
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 27.5 bits (58), Expect = 4.4
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 432 PGLTGQS-TDTDYSSDGGYKSLPSSINCSTSPKKVSGIPRRSIEQKIL 478
P G S + TDY+ D YKSL ++ S P KV + + QK +
Sbjct: 113 PSSKGSSLSSTDYNGDRSYKSLQKFVSDSI-PSKVKILTSEAKTQKFI 159
>SPAC4G9.11c |cmb1||cytosine-mismatch binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 27.1 bits (57), Expect = 5.9
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 184 TTLTSSDNSGLVRFIVTSLKTFIRTLHSTMTVLYIAPITPKNFITYKDKCTSFVVDTISK 243
TTL S++ +GL + I LKT + + A P+ F + K + D I K
Sbjct: 36 TTLVSAEKNGLQKLIPPRLKTI---WNQMLVETKGAGNGPERFEMIRQKYKALTADEIQK 92
Query: 244 TKYFATELSRSEWIATFRDYMNKKMTLAPTSIWNE-QASTRKLSSLSSEAQKSKRP 298
K E ++ A + +M + PT I +E + +++ S S + + P
Sbjct: 93 YKNKLQE----QFDAEKKRFMETLRSFTPTEIDSENRRRSKEAHSTGSRYYRLRHP 144
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 340 GTKYLQALAGSTDKRYIKRDSSLGEKSERKPSLYTARSRSIENF 383
GT+ +A+AGS+ +K+++S SE KPS + +++ F
Sbjct: 1237 GTRKPRAIAGSSSSTAVKKEAS----SESKPSTTNRKQQTLLEF 1276
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 26.6 bits (56), Expect = 7.8
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 421 SKESVNGSRRSPGLTGQSTDTDYSSDGGYKSLPSSINCSTSPKKVSGIPRRSIEQKILST 480
+++ V+ +RR+P +S SS G + P S N ST+ + +E+K++++
Sbjct: 45 NRKRVSTTRRTPSKPIRSQPLTPSSSKGAGNEPKSQNSSTTRGSAKKQSSKGLEEKLINS 104
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 365 KSERKPSLYTARSRSIENFHNQLTTADRITKQIVIEE 401
K+ERK AR + E HN+ A ++ K V EE
Sbjct: 109 KAERKTKRPRARRAANEGEHNESVPAKKVKKNTVKEE 145
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.126 0.355
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,917,366
Number of Sequences: 5004
Number of extensions: 74871
Number of successful extensions: 217
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 210
Number of HSP's gapped (non-prelim): 20
length of query: 488
length of database: 2,362,478
effective HSP length: 76
effective length of query: 412
effective length of database: 1,982,174
effective search space: 816655688
effective search space used: 816655688
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 56 (26.6 bits)
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