GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002435-TA|BGIBMGA002435-PA|undefined
         (488 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-1729|AAF50210.2| 1392|Drosophila melanogaster CG32046-P...    44   4e-04
AY084162-1|AAL89900.1|  331|Drosophila melanogaster RE37150p pro...    42   0.003
AY052056-1|AAK93480.1| 1218|Drosophila melanogaster LP08452p pro...    38   0.041
AE014296-1730|AAN11956.2| 1218|Drosophila melanogaster CG32046-P...    38   0.041
AY069417-1|AAL39562.1|  661|Drosophila melanogaster LD11247p pro...    34   0.38 
AE014296-537|AAF47706.3|  661|Drosophila melanogaster CG32484-PA...    34   0.38 
AY071461-1|AAL49083.1|  691|Drosophila melanogaster RE54096p pro...    31   2.7  
AY069263-1|AAL39408.1|  426|Drosophila melanogaster GM06806p pro...    31   2.7  
AE014296-3713|AAF51857.2|  680|Drosophila melanogaster CG7369-PA...    31   2.7  
AB190179-1|BAD44692.1|  841|Drosophila melanogaster transcriptio...    31   2.7  
AE014297-4166|AAF56739.2|  458|Drosophila melanogaster CG12879-P...    30   6.2  
BT015213-1|AAT94442.1| 1052|Drosophila melanogaster RE46469p pro...    30   8.2  
AE014297-1047|AAF54456.1|  868|Drosophila melanogaster CG8516-PA...    30   8.2  
AE014296-2119|AAS65016.1|  750|Drosophila melanogaster CG5620-PB...    30   8.2  
AE014296-2118|AAF49939.2|  750|Drosophila melanogaster CG5620-PA...    30   8.2  

>AE014296-1729|AAF50210.2| 1392|Drosophila melanogaster CG32046-PA,
            isoform A protein.
          Length = 1392

 Score = 44.4 bits (100), Expect = 4e-04
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 12/80 (15%)

Query: 72   SLLQDVVDIKTLLLQLKRVLQESETLDP-------LLAACAESPARGN----GRRPPASP 120
            +++QDV+  K  LL+L+R+LQE+ETL+P       L AAC     + N         ++ 
Sbjct: 1071 AMIQDVLQFKKQLLRLRRILQETETLNPFENDNVQLFAACGLDSKQLNDIDLASLTSSTT 1130

Query: 121  LHP-DACAEMRRQIIYLQGQ 139
              P     ++RRQ++YLQGQ
Sbjct: 1131 EDPLQELTDLRRQVVYLQGQ 1150


>AY084162-1|AAL89900.1|  331|Drosophila melanogaster RE37150p
           protein.
          Length = 331

 Score = 41.5 bits (93), Expect = 0.003
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 12/80 (15%)

Query: 72  SLLQDVVDIKTLLLQLKRVLQESETLDP-------LLAACAESPARGN----GRRPPASP 120
           +++QDV+  K  LL+L+R+LQ +ETL+P       L AAC     + N         ++ 
Sbjct: 10  AMIQDVLQFKKQLLRLRRILQVTETLNPFENDNVQLFAACGLDSKQLNDIDLASLTSSTT 69

Query: 121 LHP-DACAEMRRQIIYLQGQ 139
             P     ++RRQ++YLQGQ
Sbjct: 70  EDPLQELTDLRRQVVYLQGQ 89


>AY052056-1|AAK93480.1| 1218|Drosophila melanogaster LP08452p protein.
          Length = 1218

 Score = 37.5 bits (83), Expect = 0.041
 Identities = 15/28 (53%), Positives = 24/28 (85%)

Query: 72   SLLQDVVDIKTLLLQLKRVLQESETLDP 99
            +++QDV+  K  LL+L+R+LQE+ETL+P
Sbjct: 1071 AMIQDVLQFKKQLLRLRRILQETETLNP 1098


>AE014296-1730|AAN11956.2| 1218|Drosophila melanogaster CG32046-PB,
            isoform B protein.
          Length = 1218

 Score = 37.5 bits (83), Expect = 0.041
 Identities = 15/28 (53%), Positives = 24/28 (85%)

Query: 72   SLLQDVVDIKTLLLQLKRVLQESETLDP 99
            +++QDV+  K  LL+L+R+LQE+ETL+P
Sbjct: 1071 AMIQDVLQFKKQLLRLRRILQETETLNP 1098


>AY069417-1|AAL39562.1|  661|Drosophila melanogaster LD11247p
           protein.
          Length = 661

 Score = 34.3 bits (75), Expect = 0.38
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 3/102 (2%)

Query: 293 QKSKRPVTNGTVKCQCGARQANGLANGDDVHTDRRTDSVHLRTNSR--VGTKYLQALAGS 350
           +KS+R   +G   C  G   +  ++   D H    T S    TNSR  + +      A  
Sbjct: 88  KKSRRLAMSGACACSSGNPNSPAISASGDHHRPATTPS-KCSTNSRDNIPSDGGDVSAFL 146

Query: 351 TDKRYIKRDSSLGEKSERKPSLYTARSRSIENFHNQLTTADR 392
               Y+ +  SL  +  R+ ++ T R RS + F + +  ADR
Sbjct: 147 YVFAYVLKKRSLRSELHRERTVLTLRFRSFDTFEDNMREADR 188


>AE014296-537|AAF47706.3|  661|Drosophila melanogaster CG32484-PA
           protein.
          Length = 661

 Score = 34.3 bits (75), Expect = 0.38
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 3/102 (2%)

Query: 293 QKSKRPVTNGTVKCQCGARQANGLANGDDVHTDRRTDSVHLRTNSR--VGTKYLQALAGS 350
           +KS+R   +G   C  G   +  ++   D H    T S    TNSR  + +      A  
Sbjct: 88  KKSRRLAMSGACACSSGNPNSPAISASGDHHRPATTPS-KCSTNSRDNIPSDGGDVSAFL 146

Query: 351 TDKRYIKRDSSLGEKSERKPSLYTARSRSIENFHNQLTTADR 392
               Y+ +  SL  +  R+ ++ T R RS + F + +  ADR
Sbjct: 147 YVFAYVLKKRSLRSELHRERTVLTLRFRSFDTFEDNMREADR 188


>AY071461-1|AAL49083.1|  691|Drosophila melanogaster RE54096p
           protein.
          Length = 691

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 9/109 (8%)

Query: 359 DSSLGEKSERKPSLYTARSRSIENFHNQLTTADRITKQIVIEEMPLVKHHTSYGDLYTGR 418
           D+SLG++  R   L  +R  ++E +   L T    +++   ++     HH  +  L+   
Sbjct: 269 DNSLGKQVSRILQLLVSRLTTLEQYEEFLQTIS--SEEAQSQQQQHHHHHGHHNHLHNAF 326

Query: 419 ---ISSKESVNGSRRSPGLTGQSTDTDYSSDGGYKSLPSSIN-CSTSPK 463
              + S    NG   + G  G ++ T  SS  G+ S  S+ N  ST+P+
Sbjct: 327 QTFLGSSSHANG---ASGGGGSASGTSNSSSSGHTSSASTSNSISTTPQ 372


>AY069263-1|AAL39408.1|  426|Drosophila melanogaster GM06806p
           protein.
          Length = 426

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 9/109 (8%)

Query: 359 DSSLGEKSERKPSLYTARSRSIENFHNQLTTADRITKQIVIEEMPLVKHHTSYGDLYTGR 418
           D+SLG++  R   L  +R  ++E +   L T    +++   ++     HH  +  L+   
Sbjct: 15  DNSLGKQVSRILQLLVSRLTTLEQYEEFLQTIS--SEEAQSQQQQHHHHHGHHNHLHNAF 72

Query: 419 ---ISSKESVNGSRRSPGLTGQSTDTDYSSDGGYKSLPSSIN-CSTSPK 463
              + S    NG   + G  G ++ T  SS  G+ S  S+ N  ST+P+
Sbjct: 73  QTFLGSSSHANG---ASGGGGSASGTSNSSSSGHTSSASTSNSISTTPQ 118


>AE014296-3713|AAF51857.2|  680|Drosophila melanogaster CG7369-PA
           protein.
          Length = 680

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 9/109 (8%)

Query: 359 DSSLGEKSERKPSLYTARSRSIENFHNQLTTADRITKQIVIEEMPLVKHHTSYGDLYTGR 418
           D+SLG++  R   L  +R  ++E +   L T    +++   ++     HH  +  L+   
Sbjct: 269 DNSLGKQVSRILQLLVSRLTTLEQYEEFLQTIS--SEEAQSQQQQHHHHHGHHNHLHNAF 326

Query: 419 ---ISSKESVNGSRRSPGLTGQSTDTDYSSDGGYKSLPSSIN-CSTSPK 463
              + S    NG   + G  G ++ T  SS  G+ S  S+ N  ST+P+
Sbjct: 327 QTFLGSSSHANG---ASGGGGSASGTSNSSSSGHTSSASTSNSISTTPQ 372


>AB190179-1|BAD44692.1|  841|Drosophila melanogaster transcription
           factor dRFX2 protein.
          Length = 841

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 2/104 (1%)

Query: 318 NGDDVHTDRRTDSVHLRTNSRVGTKYLQALAGSTDKRYIKRDSSLGEKSERKPSLYTARS 377
           N +++H+D      HL T + V     + +A        K    +  +   +   YT  +
Sbjct: 89  NSNNIHSDVTDLDKHLNTTALVDPNEREPMAAPIFLPSFKASDHVSHQFSNQLHSYTTTN 148

Query: 378 RSIENFHNQLTTADRITKQIVIEEMPLVKHHTSYGDLYTGRISS 421
            SI N +N   + +R    I +E   L   H S  + ++  ISS
Sbjct: 149 NSINNPNNNKASTNR--SPIEMENESLNATHLSSNNDFSNHISS 190


>AE014297-4166|AAF56739.2|  458|Drosophila melanogaster CG12879-PA
           protein.
          Length = 458

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 435 TGQSTDTDYSSDGGYKSLPSSINCSTSPKKV 465
           T Q  DTDY S   +K+L +SIN S  P +V
Sbjct: 365 TRQLYDTDYISQADWKTLLNSINLSVRPLEV 395


>BT015213-1|AAT94442.1| 1052|Drosophila melanogaster RE46469p
           protein.
          Length = 1052

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 278 EQASTRKLSSLSSEAQKSKRPVTNGTVKCQCGARQANGLANGDDVHTDRRTDSVHLRTNS 337
           E   TR    +S E +  +RP T+  + C+   + A  L      + + +T +V L  NS
Sbjct: 251 EVRETRSSQIISPETRNRRRPFTSADINCKT-LKAAAHLHENMRSYDEEKTAAVKLE-NS 308

Query: 338 RVGTKYLQALAGSTDKRYIKRDSSLGEKSERKPSLYTAR 376
           R  +K    +  S D    +   +   K+ +   + TA+
Sbjct: 309 RSRSKSPVEVFKSNDDAVKRNTGNTNNKTAKSSEVATAK 347


>AE014297-1047|AAF54456.1|  868|Drosophila melanogaster CG8516-PA
           protein.
          Length = 868

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 12/105 (11%)

Query: 363 GEKSERKPSLYTARSRSIENFHNQLTTADRITKQIVIEEMPLVKHHTSYGDLYTGRISSK 422
           G+ S R P+L    SR + + H    + D       IE+ P  +HH +  D+YT    + 
Sbjct: 303 GKPSNRNPTL----SRDVNDSHYATVSDDSDETYAAIED-PNNRHHANAADIYTSGSETY 357

Query: 423 ESVNGSRRSPGLTGQSTDTDYSSDGGYKSLPSSINCSTSPKKVSG 467
             +   + +P +   + + + SS     SLP++   +  P   SG
Sbjct: 358 AQIQPMQANPIVV--AVEINNSS-----SLPTASTSAVRPTSSSG 395


>AE014296-2119|AAS65016.1|  750|Drosophila melanogaster CG5620-PB,
           isoform B protein.
          Length = 750

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 1/86 (1%)

Query: 402 MPLVKHHT-SYGDLYTGRISSKESVNGSRRSPGLTGQSTDTDYSSDGGYKSLPSSINCST 460
           +PL+ HH  +      G +++  +   S  S   TG  T T  SS     + P+S++ S 
Sbjct: 504 LPLLHHHVHAQQTTAIGTVAAAAAAVASGASGTNTGTGTGTGGSSSSATTTAPTSVSVSL 563

Query: 461 SPKKVSGIPRRSIEQKILSTKHVKAS 486
           +       PRR    ++ ++  + AS
Sbjct: 564 ATAPPPLAPRRPSTLQLQASGAISAS 589


>AE014296-2118|AAF49939.2|  750|Drosophila melanogaster CG5620-PA,
           isoform A protein.
          Length = 750

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 1/86 (1%)

Query: 402 MPLVKHHT-SYGDLYTGRISSKESVNGSRRSPGLTGQSTDTDYSSDGGYKSLPSSINCST 460
           +PL+ HH  +      G +++  +   S  S   TG  T T  SS     + P+S++ S 
Sbjct: 504 LPLLHHHVHAQQTTAIGTVAAAAAAVASGASGTNTGTGTGTGGSSSSATTTAPTSVSVSL 563

Query: 461 SPKKVSGIPRRSIEQKILSTKHVKAS 486
           +       PRR    ++ ++  + AS
Sbjct: 564 ATAPPPLAPRRPSTLQLQASGAISAS 589


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.313    0.126    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,338,847
Number of Sequences: 52641
Number of extensions: 851312
Number of successful extensions: 2497
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2482
Number of HSP's gapped (non-prelim): 20
length of query: 488
length of database: 24,830,863
effective HSP length: 88
effective length of query: 400
effective length of database: 20,198,455
effective search space: 8079382000
effective search space used: 8079382000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 64 (29.9 bits)