GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002434-TA|BGIBMGA002434-PA|undefined
         (133 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   1.2  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   3.8  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    20   8.8  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 55  NMLDRQLAAISQGISAPDSLTASNNSLTSIGTMNKRHVDSSDKRQR---IDANTRIQWRI 111
           N+ ++QL      +++ D      N+L+   T N   +D S+ RQ     D+ TR+    
Sbjct: 482 NLDNQQLELKPIDLNSGDLSMLETNNLSETFTQNLSLMDESEGRQEPNMTDSLTRLANSA 541

Query: 112 YNNKKPIRQRFQGEP 126
            +N       ++G P
Sbjct: 542 LDNICQASDMYKGAP 556


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 23  SGLNSLDERQLQQELSSSKSAVRQWSQLLEQSNMLDRQL 61
           +GL +L    L   + SS   +  W  L++  + +D +L
Sbjct: 477 AGLATLSVLNLLSVIKSSFLDINTWKMLVKSFDAIDSKL 515


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
          protein.
          Length = 535

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 39 SSKSAVRQWSQLLEQSNMLDRQLAAIS 65
          SS   + +W  LL+    LDR L  ++
Sbjct: 58 SSNVGINKWRFLLQCLEDLDRSLRKLN 84


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.125    0.348 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,380
Number of Sequences: 317
Number of extensions: 857
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 133
length of database: 114,650
effective HSP length: 51
effective length of query: 82
effective length of database: 98,483
effective search space:  8075606
effective search space used:  8075606
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)
S2: 39 (19.8 bits)