Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002434-TA|BGIBMGA002434-PA|undefined
(133 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical pr... 33 0.068
Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical pr... 33 0.068
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 29 0.84
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 29 0.84
U21308-9|AAW57822.1| 787|Caenorhabditis elegans Nfi (nuclear fa... 28 1.9
U21308-8|AAN60509.2| 807|Caenorhabditis elegans Nfi (nuclear fa... 28 1.9
U21308-7|AAW57823.1| 823|Caenorhabditis elegans Nfi (nuclear fa... 28 1.9
Z93382-11|CAI46609.1| 390|Caenorhabditis elegans Hypothetical p... 28 2.6
Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical p... 28 2.6
Z68108-15|CAJ58502.1| 582|Caenorhabditis elegans Hypothetical p... 27 4.5
Z68108-5|CAD44152.2| 725|Caenorhabditis elegans Hypothetical pr... 27 4.5
AY390537-1|AAQ94949.1| 692|Caenorhabditis elegans SMA-9 class B... 27 4.5
Z78061-3|CAB60286.1| 662|Caenorhabditis elegans Hypothetical pr... 27 5.9
Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical pr... 27 5.9
L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical p... 27 5.9
AL117200-16|CAB60587.1| 662|Caenorhabditis elegans Hypothetical... 27 5.9
U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical pr... 26 7.8
>Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical
protein C17G1.4b protein.
Length = 844
Score = 33.1 bits (72), Expect = 0.068
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 23 SGLNSLDERQLQQELSSSKSAVRQWSQLLEQSNMLDRQLAAISQ----GISAPDSLTASN 78
S S+D+RQLQQ+ + ++Q+ Q ++ M +Q+AA Q G S P S
Sbjct: 706 SSRGSMDQRQLQQQ----QIQMQQYHQHMQMQKMQQQQMAAQQQMSRMGGSGPSSAGPGG 761
Query: 79 NSLTSIGTMNKRHVDS 94
+ L S+ + + DS
Sbjct: 762 SQLPSLSAPSLQRADS 777
>Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical
protein C17G1.4a protein.
Length = 925
Score = 33.1 bits (72), Expect = 0.068
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 23 SGLNSLDERQLQQELSSSKSAVRQWSQLLEQSNMLDRQLAAISQ----GISAPDSLTASN 78
S S+D+RQLQQ+ + ++Q+ Q ++ M +Q+AA Q G S P S
Sbjct: 706 SSRGSMDQRQLQQQ----QIQMQQYHQHMQMQKMQQQQMAAQQQMSRMGGSGPSSAGPGG 761
Query: 79 NSLTSIGTMNKRHVDS 94
+ L S+ + + DS
Sbjct: 762 SQLPSLSAPSLQRADS 777
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
K12F2.1 protein.
Length = 1969
Score = 29.5 bits (63), Expect = 0.84
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 12 NSLHRLDSSLRSGLNSLDERQLQQELSSSKSAVRQWSQLLEQSNMLDRQ 60
NSLHRL S+L+S L+ + R+ E S + A+ ++ LE N + R+
Sbjct: 1312 NSLHRLKSTLQSQLD--ETRRNYDEESRERQALAATAKNLEHENTILRE 1358
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
protein.
Length = 1969
Score = 29.5 bits (63), Expect = 0.84
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 12 NSLHRLDSSLRSGLNSLDERQLQQELSSSKSAVRQWSQLLEQSNMLDRQ 60
NSLHRL S+L+S L+ + R+ E S + A+ ++ LE N + R+
Sbjct: 1312 NSLHRLKSTLQSQLD--ETRRNYDEESRERQALAATAKNLEHENTILRE 1358
>U21308-9|AAW57822.1| 787|Caenorhabditis elegans Nfi (nuclear
factor i) family protein1, isoform b protein.
Length = 787
Score = 28.3 bits (60), Expect = 1.9
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 8 VVNSNSLHRLDSSLRSGLNSLDERQLQQELSSSKSAVRQWSQLLEQSNMLDRQLAAISQG 67
+V NS+HR DSS +G NSL ++ + + + ++Q+ L I
Sbjct: 686 LVPGNSIHRPDSSASNGSNSLG-------VAMGLAVPQNIALAVQQTQNAMSPLHQIRVS 738
Query: 68 ISAPDSLTASNNSLTSIGTMNKRHVDSS 95
+ AP + + S+++ +S+G N+ V ++
Sbjct: 739 VGAPPACSPSSSN-SSLGAANQAPVSNT 765
>U21308-8|AAN60509.2| 807|Caenorhabditis elegans Nfi (nuclear
factor i) family protein1, isoform a protein.
Length = 807
Score = 28.3 bits (60), Expect = 1.9
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 8 VVNSNSLHRLDSSLRSGLNSLDERQLQQELSSSKSAVRQWSQLLEQSNMLDRQLAAISQG 67
+V NS+HR DSS +G NSL ++ + + + ++Q+ L I
Sbjct: 706 LVPGNSIHRPDSSASNGSNSLG-------VAMGLAVPQNIALAVQQTQNAMSPLHQIRVS 758
Query: 68 ISAPDSLTASNNSLTSIGTMNKRHVDSS 95
+ AP + + S+++ +S+G N+ V ++
Sbjct: 759 VGAPPACSPSSSN-SSLGAANQAPVSNT 785
>U21308-7|AAW57823.1| 823|Caenorhabditis elegans Nfi (nuclear
factor i) family protein1, isoform c protein.
Length = 823
Score = 28.3 bits (60), Expect = 1.9
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 8 VVNSNSLHRLDSSLRSGLNSLDERQLQQELSSSKSAVRQWSQLLEQSNMLDRQLAAISQG 67
+V NS+HR DSS +G NSL ++ + + + ++Q+ L I
Sbjct: 722 LVPGNSIHRPDSSASNGSNSLG-------VAMGLAVPQNIALAVQQTQNAMSPLHQIRVS 774
Query: 68 ISAPDSLTASNNSLTSIGTMNKRHVDSS 95
+ AP + + S+++ +S+G N+ V ++
Sbjct: 775 VGAPPACSPSSSN-SSLGAANQAPVSNT 801
>Z93382-11|CAI46609.1| 390|Caenorhabditis elegans Hypothetical
protein F45G2.2b protein.
Length = 390
Score = 27.9 bits (59), Expect = 2.6
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 10 NSNSLHRLDSSLRSGLNSLDERQ--LQQELSSSKSAVRQWSQLLEQSNMLDRQLAAISQG 67
++N + +L + LR ++ ++E + L +E A RQ+++L + +L Q+A S
Sbjct: 242 DANLISKLQAMLRKCISRIEELEEDLLEERKLRMKAERQFNELRSEYEVLQEQMAEASGQ 301
Query: 68 ISA 70
++A
Sbjct: 302 LTA 304
>Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical
protein F45G2.2a protein.
Length = 1235
Score = 27.9 bits (59), Expect = 2.6
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 10 NSNSLHRLDSSLRSGLNSLDERQ--LQQELSSSKSAVRQWSQLLEQSNMLDRQLAAISQG 67
++N + +L + LR ++ ++E + L +E A RQ+++L + +L Q+A S
Sbjct: 1087 DANLISKLQAMLRKCISRIEELEEDLLEERKLRMKAERQFNELRSEYEVLQEQMAEASGQ 1146
Query: 68 ISA 70
++A
Sbjct: 1147 LTA 1149
>Z68108-15|CAJ58502.1| 582|Caenorhabditis elegans Hypothetical
protein T05A10.1k protein.
Length = 582
Score = 27.1 bits (57), Expect = 4.5
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 3 MMMIMVVNSNSLHRLDSSLRSGLN--SLDERQLQQELSSSKSAVRQWSQLLEQSNMLDRQ 60
MMM +++ + HRL+ R LN L + QLQ S S +Q SQ +Q + +Q
Sbjct: 21 MMMPQNISAETYHRLNQVQREQLNHQRLLQAQLQTNGPGSVSQQQQASQQQQQVQHVQQQ 80
>Z68108-5|CAD44152.2| 725|Caenorhabditis elegans Hypothetical
protein T05A10.1b protein.
Length = 725
Score = 27.1 bits (57), Expect = 4.5
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 3 MMMIMVVNSNSLHRLDSSLRSGLN--SLDERQLQQELSSSKSAVRQWSQLLEQSNMLDRQ 60
MMM +++ + HRL+ R LN L + QLQ S S +Q SQ +Q + +Q
Sbjct: 21 MMMPQNISAETYHRLNQVQREQLNHQRLLQAQLQTNGPGSVSQQQQASQQQQQVQHVQQQ 80
>AY390537-1|AAQ94949.1| 692|Caenorhabditis elegans SMA-9 class B
protein.
Length = 692
Score = 27.1 bits (57), Expect = 4.5
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 3 MMMIMVVNSNSLHRLDSSLRSGLN--SLDERQLQQELSSSKSAVRQWSQLLEQSNMLDRQ 60
MMM +++ + HRL+ R LN L + QLQ S S +Q SQ +Q + +Q
Sbjct: 21 MMMPQNISAETYHRLNQVQREQLNHQRLLQAQLQTNGPGSVSQQQQASQQQQQVQHVQQQ 80
>Z78061-3|CAB60286.1| 662|Caenorhabditis elegans Hypothetical
protein C48G7.3 protein.
Length = 662
Score = 26.6 bits (56), Expect = 5.9
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 9 VNSNSLHRLDSSLRSGLNSL---DERQLQQELSSSKSAVRQWSQLLEQSNMLDRQLAAIS 65
+NSN + +D+ L + L+ L + + L + + + QL+ Q+ + R++
Sbjct: 320 LNSNQILNIDAVLEAVLHKLLLREVKPLLYHVMIKEHSKAGALQLISQNQGVVRKMNLTE 379
Query: 66 QGISAPDSLTASNNSL 81
G S P+SL ++S+
Sbjct: 380 LGFSNPESLVTPSSSI 395
>Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical
protein C54D10.7 protein.
Length = 1144
Score = 26.6 bits (56), Expect = 5.9
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 72 DSLTASNNSLTSIGTMNKRHVDSSDKRQRIDANTRIQWRIYNNKKPIRQ 120
DS +A +L N+R + S KR AN RI+ +I N K I +
Sbjct: 41 DSQSAHQKALKD-AEENRRQYEESAKRSEQAANERIRSQIDENNKSIEK 88
>L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical
protein C14B9.8 protein.
Length = 1226
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/52 (21%), Positives = 25/52 (48%)
Query: 18 DSSLRSGLNSLDERQLQQELSSSKSAVRQWSQLLEQSNMLDRQLAAISQGIS 69
D G + R L +E+ + R+W+ + + +L +QL +S+ ++
Sbjct: 815 DYDTELGCQHITVRMLMEEVHTKACEAREWALVRLTAGLLKKQLEELSKAVT 866
>AL117200-16|CAB60587.1| 662|Caenorhabditis elegans Hypothetical
protein C48G7.3 protein.
Length = 662
Score = 26.6 bits (56), Expect = 5.9
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 9 VNSNSLHRLDSSLRSGLNSL---DERQLQQELSSSKSAVRQWSQLLEQSNMLDRQLAAIS 65
+NSN + +D+ L + L+ L + + L + + + QL+ Q+ + R++
Sbjct: 320 LNSNQILNIDAVLEAVLHKLLLREVKPLLYHVMIKEHSKAGALQLISQNQGVVRKMNLTE 379
Query: 66 QGISAPDSLTASNNSL 81
G S P+SL ++S+
Sbjct: 380 LGFSNPESLVTPSSSI 395
>U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical
protein C27A2.1 protein.
Length = 1076
Score = 26.2 bits (55), Expect = 7.8
Identities = 16/64 (25%), Positives = 25/64 (39%)
Query: 18 DSSLRSGLNSLDERQLQQELSSSKSAVRQWSQLLEQSNMLDRQLAAISQGISAPDSLTAS 77
D S LN D ++ Q SS S +W Q D + + + P++ A
Sbjct: 408 DEEQNSQLNRQDRYRVLQNFSSDASKAYRWYQQNRSQFKGDVYMPIMDMVLKTPEAAKAL 467
Query: 78 NNSL 81
NS+
Sbjct: 468 ENSV 471
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.315 0.125 0.348
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,838
Number of Sequences: 27539
Number of extensions: 94318
Number of successful extensions: 410
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 402
Number of HSP's gapped (non-prelim): 18
length of query: 133
length of database: 12,573,161
effective HSP length: 74
effective length of query: 59
effective length of database: 10,535,275
effective search space: 621581225
effective search space used: 621581225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)
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