GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002433-TA|BGIBMGA002433-PA|undefined
         (668 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    32   0.017
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             29   0.093
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    28   0.28 

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 31.9 bits (69), Expect = 0.017
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 34  PLPKLPSSFDSEPSPDYEAPAPIYDPPSPILPKPIQIPEFEQTQNSH---MSTLDRYRNR 90
           P   LP S+ S        P  I  P + ++ KP  IP  EQT  SH     T+++  +R
Sbjct: 827 PYMFLPVSYMSTTMAGVIYPPVIGTPSTGMMYKPFLIP--EQTSISHENNQPTMNKCSDR 884

Query: 91  TRPSTIQTSLEEE 103
            RP++  TS++ E
Sbjct: 885 KRPASQATSVKAE 897


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 29.5 bits (63), Expect = 0.093
 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 581 IKRKCFNAVMSAEESNLQHSWHS-PNNYGYS----TDSTPTPDNINTSIDTPSAPNDSNT 635
           ++ K +   M  E      S HS P+  G      T  T T     T+  T + PN +  
Sbjct: 624 LRNKVYKLAMERERDASLSSTHSHPHEPGAPATTITTITTTTTTTTTTTTTTTTPNTTQN 683

Query: 636 SINTPSASKVQTTQDIETSAAEQTGPNEK 664
           +  T    +V    D E S AE+    EK
Sbjct: 684 ASATTPPPQVDEVDDKELSGAEEEKEVEK 712



 Score = 25.4 bits (53), Expect = 1.5
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 609 YSTDSTPTPDNINTSIDTPSAPNDSNTSI-NTPSASKVQTTQDIETSAAEQT 659
           +S+   P P N+      P  P  S+TS+  T + +   TT    T+AA  T
Sbjct: 75  FSSSCDPVPGNLEQIGSRPLHPPASSTSLPATITTTTTTTTTTTATAAATAT 126


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 27.9 bits (59), Expect = 0.28
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 355 VQSNSESGSKHAT--PDSPGTPTHASASLSLSDGRDFFDDEIADQPAL 400
           + S S+SG +  T  PD P + + +SA  S+       D E+ D P L
Sbjct: 574 LDSPSDSGIESGTEKPDKPASSSASSAPTSVCSSPRSEDKEVEDMPVL 621


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.125    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,720
Number of Sequences: 429
Number of extensions: 7129
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 4
length of query: 668
length of database: 140,377
effective HSP length: 62
effective length of query: 606
effective length of database: 113,779
effective search space: 68950074
effective search space used: 68950074
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 47 (23.0 bits)