GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002432-TA|BGIBMGA002432-PA|IPR002490|ATPase, V0/A0
complex, 116-kDa subunit
         (836 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    27   0.70 
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    27   0.70 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    25   1.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    25   2.8  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   3.7  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    24   4.9  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 26.6 bits (56), Expect = 0.70
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 725 VLSTISHTASYLRLWALSLAHAELSEVLWNMVLTFGLKDHNYVGAIKLYV 774
           V  T S     + L++L LAH +L        L  G   H  VGA+ +Y+
Sbjct: 319 VTKTDSMLIRNINLFSLQLAHQKLEFSACGFFLINGTLLHTIVGAVTVYL 368


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 26.6 bits (56), Expect = 0.70
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 725 VLSTISHTASYLRLWALSLAHAELSEVLWNMVLTFGLKDHNYVGAIKLYV 774
           V  T S     + L++L LAH +L        L  G   H  VGA+ +Y+
Sbjct: 144 VTKTDSMLIRNINLFSLQLAHQKLEFSACGFFLINGTLLHTIVGAVTVYL 193


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 1/93 (1%)

Query: 455 FSMYTGLVYNDIFSKSLNIFGSSWHIPYDNHTLAENGALTLDPKDAYTEVPYFIGIDPIW 514
           F   T + + ++F+  +N+F     +    H                 E P FI I  I 
Sbjct: 451 FVFLTNMTFQNVFAV-INVFSGELPVFLQEHRNGMYRPSIYFISKTLAESPIFIIIPVIL 509

Query: 515 QSADNKIIFLNSYKMKLSIIFGVIHMIFGVCMS 547
            S    +I LNS   +  I  G++ ++  V +S
Sbjct: 510 TSVCYFMIGLNSQGFRFYIACGIMILVANVAIS 542


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 1/93 (1%)

Query: 455 FSMYTGLVYNDIFSKSLNIFGSSWHIPYDNHTLAENGALTLDPKDAYTEVPYFIGIDPIW 514
           F   T + + ++F+  +N+F     +    H                 E P FI I    
Sbjct: 451 FVFLTNMTFQNVFAV-INVFSGELPVFLQEHRNGMYRPSIYFISKTLAESPIFIIIPVTL 509

Query: 515 QSADNKIIFLNSYKMKLSIIFGVIHMIFGVCMS 547
            S    +I LNS+  +  I  G++ ++  V +S
Sbjct: 510 TSVCYFMIGLNSHGFRFYIACGIMILVANVAIS 542


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 492 ALTLDPKDAYTEVPYFIGIDP 512
           A  LDPK  YT +  F+ IDP
Sbjct: 65  AAGLDPKAMYTVLLEFVQIDP 85


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 95  IDLEAKKTENEILELSHNAVNLKQNYLELTELRHVLEKTEAFFTA 139
           ID++ +   NE++    +A+ L QN LE+T  +         F+A
Sbjct: 329 IDIDKEDERNEVIS---SALKLSQNELEITACKFFSIDNALLFSA 370


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,688
Number of Sequences: 317
Number of extensions: 8502
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 6
length of query: 836
length of database: 114,650
effective HSP length: 63
effective length of query: 773
effective length of database: 94,679
effective search space: 73186867
effective search space used: 73186867
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 47 (23.0 bits)