GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002432-TA|BGIBMGA002432-PA|IPR002490|ATPase, V0/A0
complex, 116-kDa subunit
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...   584   e-167
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    32   0.28 
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    28   4.6  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    28   4.6  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    28   6.1  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    27   8.1  

>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score =  584 bits (1441), Expect = e-167
 Identities = 337/840 (40%), Positives = 460/840 (54%), Gaps = 71/840 (8%)

Query: 26  VSELGEAGSVQFRDLNPDVNAFQRKFVNEVRRCDEMERKLRYIEAEVHKDGVHIPAVKEA 85
           +S LGE  ++ F+DLNPDV AFQR FV E+RR  + ER LRY+ +E+  +G+H+P     
Sbjct: 1   MSALGELSTIHFKDLNPDVVAFQRSFVREIRRLTDTERLLRYLHSEIDLNGIHVPDHNLP 60

Query: 86  PRAPNPREIIDLE-----AKKTENEILELSHNAVNLKQNYLELTELRHVLEKTEAFF--- 137
           P   +  E   +E       + E  + +L  ++  L+  YL+  E  +VL K +AFF   
Sbjct: 61  PSYESVLESSTIEDIIERITRLEARVRQLVESSQLLEARYLQQLEFANVLTKADAFFSKS 120

Query: 138 ------------TAQEEIGMDSLTKSLI-------------SDETGQQAATRGRLGFVAG 172
                       T+    G D  T  LI             S+ET  Q  T   L FV+G
Sbjct: 121 GNTVDPLRNNYETSSIFSGEDDTTAPLIENALELGTTGTFDSEETSPQMNTT--LDFVSG 178

Query: 173 VVQRERVPAFERMLWRISRGNVFLRRAELDKPLEDPATGNEIYKTVFVAFFQGEQLKSRI 232
           ++   +    ER+LWR  RGN+F+ +   D  L   A  NE  KT+F+    G Q+  RI
Sbjct: 179 IIPTVKFQFLERILWRTLRGNLFIHQVRADDSLIHGAEKNE-EKTIFLVIAHGTQILLRI 237

Query: 233 KKVCTGFHASLYPCPPSNTERQDMVKGVRTRLEDLNMVLNQTRDHRQRVLASVAKELTSW 292
           +K+     A+L+P       R   ++     + DLN VL  TR      L  +A+ +++W
Sbjct: 238 RKISESLGATLFPVEEDAPGRTSQIQQANVSISDLNAVLENTRSALYTELTFIAEHISAW 297

Query: 293 TIMVRKMKAIYHTLNLFNMDVTKKCLIGECWVPTADLPNVQKALADGSNACGSSIPSFLN 352
             ++ K K ++  +NLFN D   KCLI E W PTA+LP VQK L + S+   S  P+ LN
Sbjct: 298 EAVLHKDKTVFQVMNLFNYDQNHKCLIAEGWCPTANLPMVQKTLRNISDLTDSQAPTILN 357

Query: 353 CIETDEEPPTFNRTNKFTRGFQNLIDAYGVASYRECNPALYTIITFPFLFAVMFGDLGHG 412
            + T E+PPT+ R NKFT GFQ++ID+YG+A+YRE N  +  I+TFPFLFA+MFGDLGHG
Sbjct: 358 VVHTSEQPPTYFRVNKFTEGFQSIIDSYGIATYREVNHGIVAIVTFPFLFAIMFGDLGHG 417

Query: 413 CIMAMFGGWMVVKEVSLAAKKSNNEIWNIFFAGRYIILLMGCFSMYTGLVYNDIFSKSLN 472
            IMA      V+ E +L AKK  +EI  + F GRYI+LLMG FSMY G VYND+FSK ++
Sbjct: 418 AIMASVALMFVLYEKTLGAKKDLDEIVGMVFYGRYIVLLMGLFSMYVGFVYNDLFSKPMS 477

Query: 473 IFGSSWHIPYDNHTLAENGALTLDPKDAYTEVPYFIGIDPIWQSADNKIIFLNSYKMKLS 532
           IF S W  P  +               A     Y IGIDP W SADN ++F+NSYKMKLS
Sbjct: 478 IFSSRWVWPVKSEEAIAR---------AVQVGTYPIGIDPTWHSADNNLLFMNSYKMKLS 528

Query: 533 IIFGVIHMIFGVCMSVVNYNFFKRRYSIFLEFLPQIVXXXXXXXXXXXXXXXKW-IAYST 591
           II GVIHM F + +S+ NY FFKR+  I+  F+P ++               KW I +  
Sbjct: 529 IILGVIHMTFCLFLSLSNYRFFKRKLDIYAVFVPSLIFLEAIFGYLVITIVYKWCIDWKA 588

Query: 592 KNDELAYTQGCAPSVLILFINMMLFSKNVPEEGCKEFMFDAQSDIQRVFVFIALLCIPVM 651
           K+ +        PS+L + I M L    + ++     ++  Q  +Q   V  AL+C+P +
Sbjct: 589 KDLQ-------PPSLLNMLILMFLSPGTLEDQ-----LYPGQKYLQVGLVIAALICVPWL 636

Query: 652 LLGKPLYLLATKKNNPKPEHSNGSVNQGIELQEQTDLGDVQPKPEAKSSGGHDHEDEPF- 710
           L+ KP  L     N    E+   S+N        +DL +V       +    + + EPF 
Sbjct: 637 LIVKPFVLWRRHSNE---ENKYQSLN--------SDLPNVDEADALMAVDSQEKQAEPFE 685

Query: 711 -SEIMIHQAIHTIEYVLSTISHTASYLRLWALSLAHAELSEVLWNMVLTFGLKDHNYVGA 769
             E++IHQ IHTIE+ L  +SHTASYLRLWALSLAH +LS VLWNM L  G +    VG+
Sbjct: 686 LGEVVIHQVIHTIEFCLGCVSHTASYLRLWALSLAHNQLSSVLWNMTLANGFRMTGIVGS 745

Query: 770 IKLYVAFCFWALFTLAILVMMEGLSAFLHTLRLHWVEFMSKFYAGLGYIFQPFCFKTILE 829
           I + + F FW + T  +LV MEG SA LH+LRLHWVE MSK + G GY F PF FK   E
Sbjct: 746 IFVVILFGFWFIATCVVLVAMEGTSAMLHSLRLHWVEGMSKHFEGEGYAFTPFTFKVTAE 805


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1115

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 13/92 (14%)

Query: 22   AYTSVSELGEAGSVQFRDLNPDVNAFQRK-------FVNEVRRCDEM----ERKLRYIEA 70
            A T++S + +A ++ FR+L+  +  F+RK       F  E+R+ D +     ++L  +E 
Sbjct: 934  ALTTISSMNQAVNMNFRELDKSIQEFKRKCQSMEREFKTELRKLDGVLEARSKRLSQLEE 993

Query: 71   EVHKDGV-HIPAVKEAPRAPNPREIIDLEAKK 101
             V   G     ++  +PRA + R  +D E KK
Sbjct: 994  RVKLLGAGSTSSIPNSPRA-SKRVSLDSEDKK 1024


>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 94  IIDLEAKKTENEILELSHNAVNLKQNYLELTELRHVLEKTEAFFTA 139
           IIDL  KK E E ++L+H A    +  + L + +   + T    TA
Sbjct: 50  IIDLNKKKAEGEAMDLNHAAPLSHETRVYLGDYKDCKDATAVVITA 95


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 423 VVKEVSLAAKKSNNEIWNIFFAGRYIILLMGCFSMYTGLVYNDIFSKSLNIFGSSWH--I 480
           V+  V  A KK N +IW  FF G   I     F+M+T    ND       I+G   +  +
Sbjct: 51  VITSVEGAPKKENKKIWE-FFKGSNKI--KNLFTMFTCCFAND----EEEIWGEETNESV 103

Query: 481 PYDNHTLAENGALTLDPKDAYTEVPYFIGIDP 512
            Y  +T      + + P     E+PY +   P
Sbjct: 104 VYKEYTYNSRWKIEI-PSYPVREIPYVVADTP 134


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 616 FSKNVPEEGCKEFMFDAQSDIQ 637
           FSKN+P   CK F+F     IQ
Sbjct: 462 FSKNIPASLCKHFLFSGTKIIQ 483


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 87  RAPNPREIIDLEAKKTENEILELSHNAVNLKQNYLE--LTELRHV 129
           R+P+P   + L       +++ L H  VN+ Q YLE  L  L H+
Sbjct: 778 RSPSPLHALFLALLLGIKDLMTLYHTTVNIHQRYLEKGLMNLGHL 822


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,859,094
Number of Sequences: 5004
Number of extensions: 167779
Number of successful extensions: 419
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 407
Number of HSP's gapped (non-prelim): 9
length of query: 836
length of database: 2,362,478
effective HSP length: 79
effective length of query: 757
effective length of database: 1,967,162
effective search space: 1489141634
effective search space used: 1489141634
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)