Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002432-TA|BGIBMGA002432-PA|IPR002490|ATPase, V0/A0
complex, 116-kDa subunit
(836 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0381 + 7951360-7951509,7952125-7952169,7952625-7952744,795... 575 e-164
10_02_0114 + 5431578-5431724,5432753-5432797,5433572-5433691,543... 561 e-160
01_06_1250 + 35726115-35726255,35727435-35727479,35728570-357286... 520 e-147
08_02_0246 + 14745367-14745372,14745452-14746106,14746299-147472... 32 2.2
08_01_0381 - 3382316-3382459,3382872-3382907,3383323-3383429,338... 31 5.0
03_01_0084 + 676538-676669,677828-677959,678085-678210,678820-67... 30 6.6
01_06_1472 - 37609732-37609851,37609883-37610104,37610542-376109... 30 6.6
12_01_0456 + 3587244-3587440,3587595-3587766,3587877-3587999,358... 30 8.8
12_01_0243 + 1816725-1816883,1816992-1817114,1817227-1817313,181... 30 8.8
>03_02_0381 +
7951360-7951509,7952125-7952169,7952625-7952744,
7952823-7952930,7953256-7953363,7953635-7953808,
7954054-7954191,7954643-7954750,7954866-7954973,
7955086-7955234,7955816-7955969,7956143-7956303,
7956391-7956597,7956703-7956886,7956974-7957057,
7957146-7957345,7957476-7957535,7957631-7957835
Length = 820
Score = 575 bits (1419), Expect = e-164
Identities = 311/844 (36%), Positives = 476/844 (56%), Gaps = 53/844 (6%)
Query: 4 MFRSEEMALCQLFIQPEAAYTSVSELGEAGSVQFRDLNPDVNAFQRKFVNEVRRCDEMER 63
+ RSE M L Q+ I E+A+ +VS LGE G +Q +DLN D + FQR + +++RC EM R
Sbjct: 15 LMRSEAMQLVQVIIPTESAHLTVSYLGELGLLQLKDLNADKSPFQRTYAAQIKRCGEMAR 74
Query: 64 KLRYIEAEVHKDGVHIPAVKEAPRAPNPREIIDLEAKKTENEILELSHNAVNLKQNYLEL 123
KLR+ + ++ K G+ A + + ++++ + E E+ E++ N LK+ Y EL
Sbjct: 75 KLRFFKEQMSKAGISTSA--QLTEISLDFDDLEIKLGELEAELAEVNANNEKLKRTYNEL 132
Query: 124 TELRHVLEKT-EAFFTAQE------------EIGMDSLTKSLISDETGQQAATRGRLGFV 170
E VL+K E F++AQ + G SL L+ +T A+ + +LG +
Sbjct: 133 LEYSTVLQKAGEFFYSAQRSAAAQQREMEANQSGESSLESPLLEQDTLTDASKQVKLGSL 192
Query: 171 AGVVQRERVPAFERMLWRISRGNVFLRRAELDKPLEDPATGNEIYKTVFVAFFQGEQLKS 230
+G+V +E+ AFER+L+R +RGN+FLR+ +D+P+ DP +G ++ K FV F+ G++ K+
Sbjct: 193 SGLVPKEKAMAFERILFRATRGNIFLRQESVDEPVTDPVSGEKVAKNAFVIFYSGDRAKA 252
Query: 231 RIKKVCTGFHASLYPCPPSNTERQDMVKGVRTRLEDLNMVLNQTRDHRQRVLASVAKELT 290
+I K+C F+A+ YP P + V+ V ++ +L ++ HR +L ++A E
Sbjct: 253 KILKICDAFNANRYPFPEDVARQLHAVQEVSAKISELKATIDMGLAHRDNILKNIASEFE 312
Query: 291 SWTIMVRKMKAIYHTLNLFNMDVTKKCLIGECWVPTADLPNVQKALADGSNACGSSIPSF 350
+W + K K IYHTLN+ ++DVTKKCL+GE W P +Q AL + S + S
Sbjct: 313 NWNRLANKEKIIYHTLNMLSVDVTKKCLVGEGWSPVFATTQIQDALQRATLDSKSQVGSI 372
Query: 351 LNCIETDEEPPTFNRTNKFTRGFQNLIDAYGVASYRECNPALYTIITFPFLFAVMFGDLG 410
+ T E PPT+ +TNKFT FQ ++DAYG+A Y+E NP ++TI+TFPFLFAVMFGD G
Sbjct: 373 FQVLNTTESPPTYFQTNKFTSAFQEIVDAYGIAKYQEANPGVFTIVTFPFLFAVMFGDWG 432
Query: 411 HGCIMAMFGGWMVVKEVSLAAKKSNNEIWNIFFAGRYIILLMGCFSMYTGLVYNDIFSKS 470
HG + + +++++E A++K +I + F GRY+I++M FS+YTGL+YN+ FS
Sbjct: 433 HGICILVSTLYLIIREKKFASQKL-GDIMEMMFGGRYVIIMMALFSIYTGLIYNEFFSVP 491
Query: 471 LNIFGSSWHIPYDNH--TLAENGALTLDPKDAYTEVPYFIGIDPIWQSADNKIIFLNSYK 528
+FG S + D A G L + Y G+DP+W + +++ FLNS K
Sbjct: 492 FELFGKSAYACRDPSCGDAATEGLLKV-------RRTYPFGVDPVWHGSRSELPFLNSLK 544
Query: 529 MKLSIIFGVIHMIFGVCMSVVNYNFFKRRYSIFLEFLPQIVXXXXXXXXXXXXXXXKWIA 588
MK+SI+ GV M G+ +S N FF+ +++ +F+PQ++ KW +
Sbjct: 545 MKMSILLGVAQMNLGIVISYFNAKFFRNSVNVWYQFIPQLIFLNSLFGYLSMLIIIKW-S 603
Query: 589 YSTKNDELAYTQGCAPSVLILFINMMLFSKNVPEEGCKEFMFDAQSDIQRVFVFIALLCI 648
K D L+ M+ + +E + +F Q +Q V + +AL+ +
Sbjct: 604 TGAKAD--------------LYHTMIYMFLSPTDELGENQLFPGQKTVQLVLLLLALVSV 649
Query: 649 PVMLLGKPLYLLATKKNNPKPEHSNGSVNQGIELQEQTDLGDVQPKPEAKSSGGHDHEDE 708
P ML+ KP +L K EH Q + + TD D +G + HE+
Sbjct: 650 PWMLIPKPFFL--------KMEHERRHQGQQYAMLQSTD--DSVVAEMGHHNGSNHHEEF 699
Query: 709 PFSEIMIHQAIHTIEYVLSTISHTASYLRLWALSLAHAELSEVLWNMVLTFGLKDHNYVG 768
FSE+ +HQ IHTIE+VL +S+TASYLRLWALSLAH+ELS V ++ VL +N +
Sbjct: 700 EFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLLAFGYNNILI 759
Query: 769 AIKLYVAFCFWALFTLAILVMMEGLSAFLHTLRLHWVEFMSKFYAGLGYIFQPFCFKTIL 828
I + T+ +L++ME LSAFLH LRLHWVEF +KFY G GY F PF F I
Sbjct: 760 RI---AGITIFICATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFAPFSFALIS 816
Query: 829 EQEE 832
E+E+
Sbjct: 817 EEED 820
>10_02_0114 +
5431578-5431724,5432753-5432797,5433572-5433691,
5433773-5433880,5434900-5435073,5435366-5435503,
5435879-5435986,5436131-5436238,5436340-5436488,
5437594-5437747,5437980-5438140,5438221-5438427,
5438575-5438758,5438846-5438929,5439023-5439222,
5439314-5439373,5439461-5439665
Length = 783
Score = 561 bits (1385), Expect = e-160
Identities = 311/833 (37%), Positives = 469/833 (56%), Gaps = 67/833 (8%)
Query: 4 MFRSEEMALCQLFIQPEAAYTSVSELGEAGSVQFRDLNPDVNAFQRKFVNEVRRCDEMER 63
+ RSE M L Q+ I E+A+ +VS LG+ G +QF+DLN D + FQR + ++++RC EM R
Sbjct: 14 LMRSEAMQLVQVIIPAESAHLAVSYLGDLGLLQFKDLNADKSPFQRTYASQIKRCGEMAR 73
Query: 64 KLRYIEAEVHKDGVHIPAVKEAPRAPNPREIIDLEAK--KTENEILELSHNAVNLKQNYL 121
KLR+ ++ K + + EI DLE K + E E+ E++ N L++ Y
Sbjct: 74 KLRFFREQMSKAAI----ATSTQFSGTSLEIDDLEVKLGELEVELTEVNANNDKLQRTYN 129
Query: 122 ELTELRHVLEKTEAFFTAQEEIGMDSLTKSLISDETGQQAATRGRLGFVAGVVQRERVPA 181
EL E VL+K +++D + Q +LG ++G+V +E+ A
Sbjct: 130 ELVEYNIVLQK------------------EMVTDPSKQV-----KLGSLSGLVPKEKAMA 166
Query: 182 FERMLWRISRGNVFLRRAELDKPLEDPATGNEIYKTVFVAFFQGEQLKSRIKKVCTGFHA 241
FER+L+R +RGN+FLR+ +D+ + DP +G ++ K FV F+ GE+ KS+I K+C F A
Sbjct: 167 FERILFRATRGNMFLRQEPVDETVTDPLSGEKVIKNAFVIFYSGERAKSKIVKICDAFGA 226
Query: 242 SLYPCPPSNTERQDMVKGVRTRLEDLNMVLNQTRDHRQRVLASVAKELTSWTIMVRKMKA 301
+ YP P ++ ++ V ++ +L + HR +L +++ E W +V+K KA
Sbjct: 227 NRYPFPEDLGKQLQTIQEVSGKISELKATIEIGLAHRDSILKNISSEFEQWNTLVKKEKA 286
Query: 302 IYHTLNLFNMDVTKKCLIGECWVPTADLPNVQKALADGSNACGSSIPSFLNCIETDEEPP 361
IYHTLN+ ++DVTKKCL+ E W P +Q AL + S + S + T E PP
Sbjct: 287 IYHTLNMLSLDVTKKCLVAEGWSPVFATSQIQDALQRATVDSKSQVGSIFQVLNTQESPP 346
Query: 362 TFNRTNKFTRGFQNLIDAYGVASYRECNPALYTIITFPFLFAVMFGDLGHGCIMAMFGGW 421
TF +TNKFT FQ ++DAYG+A Y+E NP ++TI+TFPFLFA+MFGD GHG + + +
Sbjct: 347 TFFQTNKFTSAFQEIVDAYGIAKYQEANPGVFTIVTFPFLFAIMFGDWGHGICLLLATLY 406
Query: 422 MVVKEVSLAAKKSNNEIWNIFFAGRYIILLMGCFSMYTGLVYNDIFSKSLNIFGSSWHIP 481
++++E LA++K ++I ++ F GRY+IL+M FS+YTGL+YN+ FS +FG S +
Sbjct: 407 LIIREKKLASQKL-DDIMDMMFGGRYVILMMSLFSIYTGLIYNEFFSVPFELFGKSAYAC 465
Query: 482 YDNH--TLAENGALTLDPKDAYTEVPYFIGIDPIWQSADNKIIFLNSYKMKLSIIFGVIH 539
D G + + P Y G+DP+W + +++ FLNS KMKLSI+ GV
Sbjct: 466 RDPSCGDATTEGLIKVRP-------AYSFGVDPVWHGSRSELPFLNSLKMKLSILIGVAQ 518
Query: 540 MIFGVCMSVVNYNFFKRRYSIFLEFLPQIVXXXXXXXXXXXXXXXKWIAYSTKNDELAYT 599
M G+ MS N FF+ +++ +F+PQ++ KW +K D
Sbjct: 519 MNLGIMMSYFNAKFFRNAINVWYQFIPQLIFLNSLFGYLSLLIIIKWCT-GSKAD----- 572
Query: 600 QGCAPSVLILFINMMLFSKNVPEEGCKEFMFDAQSDIQRVFVFIALLCIPVMLLGKPLYL 659
+ + + +F + G E +F Q +Q V + +AL+ +P ML+ KP +L
Sbjct: 573 --------LYHVMIYMFLSPTDDLGENE-LFPGQKLVQLVLLLLALVSVPWMLIPKPFFL 623
Query: 660 LATKKNNPKPEHSNGSVNQGIELQEQTDLGDVQPKPEAKSSGGHDHEDEPFSEIMIHQAI 719
K +H Q + + TD + + E H HE+ FSE+ +HQ I
Sbjct: 624 --------KKQHEQRHQGQQYTMLQATD--ESVTELEEHQDDPHHHEEFEFSEVFVHQLI 673
Query: 720 HTIEYVLSTISHTASYLRLWALSLAHAELSEVLWNMVLTFGLKDHNYVGAIKLYVAFCFW 779
HTIE+VL +S+TASYLRLWALSLAH+ELS V + VL +N I V F F
Sbjct: 674 HTIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLVLSWGYNNIFILIIGAVIFLF- 732
Query: 780 ALFTLAILVMMEGLSAFLHTLRLHWVEFMSKFYAGLGYIFQPFCFKTILEQEE 832
T+ +L++ME LSAFLH LRLHWVEF +KFY G GY F PF F +I+E+E+
Sbjct: 733 --ATIGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFVPFAFASIIEEED 783
>01_06_1250 +
35726115-35726255,35727435-35727479,35728570-35728692,
35728804-35728911,35729247-35729360,35729440-35729613,
35729881-35729976,35730165-35730272,35730389-35730496,
35730595-35730743,35731255-35731408,35732487-35732647,
35733739-35733945,35733968-35734025,35734058-35734222,
35734305-35734388,35735670-35735863,35735952-35736011,
35736203-35736407
Length = 817
Score = 520 bits (1283), Expect = e-147
Identities = 312/844 (36%), Positives = 459/844 (54%), Gaps = 57/844 (6%)
Query: 6 RSEEMALCQLFIQPEAAYTSVSELGEAGSVQFRDLNPDVNAFQRKFVNEVRRCDEMERKL 65
RSE+M QL I E+A +V+ LGE G +QF+DLN D + FQR FVN+V+RC EM RKL
Sbjct: 14 RSEKMCFVQLIIPAESARLAVTYLGELGLLQFKDLNEDKSPFQRIFVNQVKRCSEMSRKL 73
Query: 66 RYIEAEVHKDGVHIPAVKEAPRAPNPREIIDLEAKKTENEILELSHNAVNLKQNYLELTE 125
R+ +++K GV +V+ A + E ++ + ++ EN++LE++ N+ L Q Y EL E
Sbjct: 74 RFFNDQINKAGVK-SSVRPAMQPDIDLEELEAKLREHENDLLEMNTNSEKLLQTYNELLE 132
Query: 126 LRHVLEKTEAFFT--------AQEEIG-------MDSLTKSLISDETGQQAATRGRLGFV 170
+ VL K A+ E+ MD L+ A+ + FV
Sbjct: 133 FKMVLSKAGGILASSHNHAAPAERELDEHIYDKEMDDGNAYLLEQGVHLGASENSGVKFV 192
Query: 171 AGVVQRERVPAFERMLWRISRGNVFLRRAELDKPLEDPATGNEIYKTVFVAFFQGEQLKS 230
+G++ + + AFERML+R +RGN+F +A +P+ DP +G E+ K+
Sbjct: 193 SGIILKSKAMAFERMLFRATRGNMFFNQAPAGEPVTDPISG--------------EEAKA 238
Query: 231 RIKKVCTGFHASLYPCPPSNTERQDMVKGVRTRLEDLNMVLNQTRDHRQRVLASVAKELT 290
+I K+C F AS YP P +++ + + V RL DL L+ HR + L SV +L
Sbjct: 239 KILKICGSFGASCYPVPEEMVKQRQIFREVSGRLADLEATLDAGIQHRNKALESVGSQLW 298
Query: 291 SWTIMVRKMKAIYHTLNLFNMDVTKKCLIGECWVPTADLPNVQKALADGSNACGSSIPSF 350
WTIMV+K KA+Y TLN+ N DVTKKCL+GE W P ++ L + S +
Sbjct: 299 RWTIMVKKEKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKSQIKDVLQRATLHSNSQVGII 358
Query: 351 LNCIETDEEPPTFNRTNKFTRGFQNLIDAYGVASYRECNPALYTIITFPFLFAVMFGDLG 410
+ ++T + PPT+ +T+KFT FQ ++DAYG+A Y E NPA+Y++ITFPFLFAVMFGD G
Sbjct: 359 FHEMDTIDSPPTYFQTDKFTNAFQEIVDAYGIARYEEANPAVYSVITFPFLFAVMFGDWG 418
Query: 411 HGCIMAMFGGWMVVKEVSLAAKKSNNEIWNIFFAGRYIILLMGCFSMYTGLVYNDIFSKS 470
HG + + ++++E L+++K + + F GRY+ILLM FS+Y GL+YN+ FS
Sbjct: 419 HGICLLLGACVLILREKKLSSQKLGS-FMEMAFGGRYVILLMALFSIYCGLIYNEFFSVP 477
Query: 471 LNIFGSSWHIPYDNHTLAENGALTLDPKDAYTEVPYFIGIDPIWQSADNKIIFLNSYKMK 530
+IFG S + + + A + +D PY G+DP W+ + +++ FLNS KMK
Sbjct: 478 FHIFGKSAYECREKTCSDAHTAGLIKVRD-----PYPFGVDPSWRGSRSELPFLNSLKMK 532
Query: 531 LSIIFGVIHMIFGVCMSVVNYNFFKRRYSI-FLEFLPQIVXXXXXXXXXXXXXXXKWIAY 589
+SI+ GV M G+ +S + F I FL L I Y
Sbjct: 533 MSILMGVTQMNLGIVLSYFDAKFHGNALDISFLLLLQVIEGEDKGDLFNCMIFLNSLFGY 592
Query: 590 STKNDELAYTQGCAPSVLILFINMMLF-SKNVPEEGCKEFMFDAQSDIQRVFVFIALLCI 648
+ + G + + I M L S N+ E +F Q ++Q + + +A++ +
Sbjct: 593 LALLILIKWCTGSQADLYHVMIYMFLDPSGNLGENQ----LFWGQKELQILLLLMAIVAV 648
Query: 649 PVMLLGKPLYLLATKKNNPKPEHSNGSVNQGIELQEQTDLGDVQPKPEAKSSGGHDHEDE 708
P ML KP L K E G + + E D +P++ S H+D
Sbjct: 649 PWMLFPKPFILKKLHK-----ERFQGHTYRFLGTSEM----DPDSEPDSARSR---HDDF 696
Query: 709 PFSEIMIHQAIHTIEYVLSTISHTASYLRLWALSLAHAELSEVLWNMVLTFGLKDHNYVG 768
FSE+ +HQ IH+IE+VL +S+TASYLRLWALSLAH+ELS V + +L N V
Sbjct: 697 NFSEVFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKLLVLAWGYDNLV- 755
Query: 769 AIKLYVAFCFWALFTLAILVMMEGLSAFLHTLRLHWVEFMSKFYAGLGYIFQPFCFKTIL 828
+KL V ++ T IL+ ME LSAFLH LRLHWVEFM+KFY G GY F+PF F +
Sbjct: 756 -VKL-VGLVIFSFATAFILLGMESLSAFLHALRLHWVEFMNKFYHGDGYKFRPFSFALLA 813
Query: 829 EQEE 832
+ E+
Sbjct: 814 DDED 817
>08_02_0246 + 14745367-14745372,14745452-14746106,14746299-14747269,
14748123-14749168,14750669-14751473
Length = 1160
Score = 31.9 bits (69), Expect = 2.2
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 635 DIQRVFVFIALLCIPVMLLGKPLYLLATKKNNPKPEHSNGSVNQG---IELQEQTDLGDV 691
D RV FI LL +P+ +L + + L+A KK+ P+ N + ++ I L++ L
Sbjct: 957 DASRVASFITLLTLPISVLREFIKLIAWKKSLPQAHADNATTHRARIEICLEKHPRLVSD 1016
Query: 692 QPKPEAKSSGGHDHED 707
+ SS + H D
Sbjct: 1017 DYTASSSSSKSNIHHD 1032
>08_01_0381 -
3382316-3382459,3382872-3382907,3383323-3383429,
3383518-3383587,3383839-3384663,3384748-3385044,
3385175-3385501,3385760-3386046,3386728-3386896
Length = 753
Score = 30.7 bits (66), Expect = 5.0
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 69 EAEVHKDGVHIPAVKEAPRAPNPREIIDLEAKKTENEILELSH 111
E+ +H+ + +PA+ EA AP R + D T NE+ +SH
Sbjct: 209 ESALHESPIDLPALTEAQAAPITRWLADRTDNATTNEV-NISH 250
>03_01_0084 +
676538-676669,677828-677959,678085-678210,678820-678882,
678964-679061,679133-679340,679859-679930,680016-680108,
680297-680398,680568-680665,681059-681140,681274-681362,
681960-682065,682145-682210,682527-682633,682907-683027,
683226-683411,683490-683789,683887-683967,684061-684225,
684297-684383,684476-684601,684750-684830,684917-684988,
685353-685364
Length = 934
Score = 30.3 bits (65), Expect = 6.6
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 624 GCKEFMFDAQSDIQRVFVFIALLCIPVMLLGKPLYLLATKKNNPKPEHSNGSVNQGIELQ 683
G KEF D+Q++ I+ C PV+ L LL + NP + +G ++ +L
Sbjct: 135 GGKEFSESLAPDVQKLL--ISSSCRPVVRKKAALCLLRLYRKNPDVVNIDGWSDRMAQLL 192
Query: 684 EQTDLG 689
++ DLG
Sbjct: 193 DERDLG 198
>01_06_1472 -
37609732-37609851,37609883-37610104,37610542-37610922,
37612583-37612816,37613589-37613738,37613831-37614016,
37615058-37615120
Length = 451
Score = 30.3 bits (65), Expect = 6.6
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 355 ETDEEPPTFNRTNKFTRGFQNLIDAYGVASYRECNPALYTIITFPFL 401
+TD + PT F LI + G + ECNP LY + FL
Sbjct: 327 KTDAQAPTVEDELSFLMHTLTLISSGGCRFHLECNPILYPYKQYNFL 373
>12_01_0456 +
3587244-3587440,3587595-3587766,3587877-3587999,
3588165-3588338,3588537-3588647,3588737-3588870,
3588945-3589038,3589122-3589220,3590494-3590630,
3590709-3590803,3590922-3591045,3591122-3591209,
3592867-3593043,3593130-3593167,3593398-3593485,
3594101-3594209,3594374-3594443,3594520-3594667,
3595069-3595197,3595292-3595417,3595596-3595658,
3595952-3596197
Length = 913
Score = 29.9 bits (64), Expect = 8.8
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 215 YKTVFVAFFQGEQLKSRIKKVCTGFHASLYPCPPSNTERQDMVKGVRTRLEDLNMVLNQT 274
Y +FV E LK+ VC G +A Y D+VK L+ + +N
Sbjct: 305 YSNIFVTAPSPENLKTLFDFVCKGMNALEY----KEHLHYDVVKSADPELKKATIQINVY 360
Query: 275 RDHRQRV 281
+ HRQ +
Sbjct: 361 KQHRQTI 367
>12_01_0243 +
1816725-1816883,1816992-1817114,1817227-1817313,
1817442-1817546,1817744-1817905,1818473-1818508,
1818637-1818708,1819285-1819562,1820275-1820509
Length = 418
Score = 29.9 bits (64), Expect = 8.8
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 49 RKFVNEVRRCDEMERKLRYIEAEVHKDGVHIPAVKEAPRAPNPREIIDLEAKKTENEILE 108
RK V+ +RRCDEM KL + KD V +K E+ + A++ +L+
Sbjct: 57 RKGVDLLRRCDEMVSKLGLFSSNETKDDVSTANLKYLLVPYYLGEMTERVAQEDRIPVLK 116
Query: 109 LSHNAVNLKQNYLELTELRHVLEKTEAFFTAQEE 142
S + +LK+ ++ + E ++ + E + Q++
Sbjct: 117 ASQD--HLKE-FISICEALELISEDELELSRQKQ 147
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.137 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,649,580
Number of Sequences: 37544
Number of extensions: 987440
Number of successful extensions: 2145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2118
Number of HSP's gapped (non-prelim): 14
length of query: 836
length of database: 14,793,348
effective HSP length: 88
effective length of query: 748
effective length of database: 11,489,476
effective search space: 8594128048
effective search space used: 8594128048
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 64 (29.9 bits)
- SilkBase 1999-2023 -