GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002432-TA|BGIBMGA002432-PA|IPR002490|ATPase, V0/A0
complex, 116-kDa subunit
         (836 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    25   1.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   5.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   7.8  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 5/46 (10%)

Query: 796 FLHTLRLHWVEFMSKFYAGLGYI-----FQPFCFKTILEQEENKDD 836
           F++ +R+   +FM + Y  LGY+     F PF  + + +  + ++D
Sbjct: 217 FMNVMRMKLKQFMPRLYDLLGYVMPDRTFAPFFTRVVTDTIKYRND 262


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 385 YRECNPALYTIITFPFLFAVMFGDLGHGCIMAMF 418
           Y E NP+L+ ++   ++       LG+G ++ +F
Sbjct: 40  YPEPNPSLHYLLALLYILFTFLALLGNGLVIWIF 73


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 8/22 (36%), Positives = 16/22 (72%)

Query: 422 MVVKEVSLAAKKSNNEIWNIFF 443
           M VKE++ +AK+  N++ N+ +
Sbjct: 62  MTVKELANSAKRDINDVLNVLY 83


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,227
Number of Sequences: 429
Number of extensions: 9906
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 3
length of query: 836
length of database: 140,377
effective HSP length: 63
effective length of query: 773
effective length of database: 113,350
effective search space: 87619550
effective search space used: 87619550
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 48 (23.4 bits)