Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002431-TA|BGIBMGA002431-PA|IPR007371|Thiamin
pyrophosphokinase, catalytic region, IPR007373|Thiamin
pyrophosphokinase, vitamin B1-binding region
(128 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0050 - 17500090-17500202,17500492-17500574,17501285-175013... 49 1e-06
01_07_0068 - 40861266-40861381,40861469-40861718,40861813-408619... 38 0.003
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 34 0.041
07_03_1268 + 25328448-25328506,25328589-25328768,25328872-253289... 28 2.0
04_04_1627 - 34867557-34870095,34870159-34870391,34871274-34871276 27 3.5
12_02_0761 - 22901121-22901917,22902111-22902707,22904282-229043... 27 4.7
11_06_0584 - 25220371-25222917 27 4.7
06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089 27 6.2
05_03_0190 + 9485701-9485806,9487182-9487368,9489662-9489733,949... 27 6.2
04_04_0682 - 27229936-27231087,27231954-27232337 27 6.2
03_05_0190 - 21770610-21770641,21770741-21770811,21771058-217711... 27 6.2
03_05_0776 + 27625122-27625415,27627226-27627273,27627455-276275... 26 8.2
03_02_0803 + 11365959-11366390,11366470-11366502,11367158-113672... 26 8.2
03_01_0081 + 645214-645228,645791-645856,645973-646142,646265-64... 26 8.2
>05_04_0050 -
17500090-17500202,17500492-17500574,17501285-17501319,
17501403-17501504,17502371-17502443,17504904-17505000,
17505129-17505282
Length = 218
Score = 49.2 bits (112), Expect = 1e-06
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 9 YAVLILNRPISQEEAFMKNFWEKATLRITVDGGALRWDQFLTRL-----PEEISNKMKIP 63
YA+L+LN+ + + F W++A +R+ DGGA R + L P+E+ + K P
Sbjct: 32 YALLVLNQRLPR---FAPRLWDRAQVRVCADGGANRVFDGMPELFPGQDPDEVRRRYK-P 87
Query: 64 DLITGDFDSITEETLQKYKKKG 85
D+I GD DS+ E + Y G
Sbjct: 88 DVIKGDLDSVRPEVKEYYSNMG 109
>01_07_0068 -
40861266-40861381,40861469-40861718,40861813-40861914,
40862687-40862759,40863590-40863754,40866380-40866459,
40867565-40867630,40867764-40868123,40868388-40868648
Length = 490
Score = 37.5 bits (83), Expect = 0.003
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 32 ATLRITVDGGALR-WDQFLTRLPEEISNKMKI---PDLITGDFDSITEETLQKYKKKG 85
A LR+ DGGA R +D LP E +++++ PD+I GD DSI E + Y G
Sbjct: 279 ARLRVCADGGANRVFDGMPELLPAEDPDQVRMRYKPDVIKGDMDSIRPEVKEYYSNLG 336
Score = 29.9 bits (64), Expect = 0.66
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 87 NQSLKFGELVSTSNAFDGSDTVKIKCSHTILWSMKV 122
N S+ +G L+STSN + +TV+I ++W++ +
Sbjct: 454 NTSMSYGGLISTSNIVE-EETVRITSDSDLIWTISL 488
>04_04_1445 -
33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 33.9 bits (74), Expect = 0.041
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 13 ILNRPISQEEAFMKNFWEKATLRITVDGGALRWDQFLTRLPEEISNKMKIPDLI 66
I + +S E F+ N+WEK+T +T L D T L E +K PD I
Sbjct: 280 IFGQSVSDYENFLLNYWEKSTYLVTRKQKNLHVDSVFTSLLNEFD--LKTPDTI 331
>07_03_1268 +
25328448-25328506,25328589-25328768,25328872-25328974,
25329095-25329119,25329587-25329614,25330603-25330755,
25331339-25333421,25333666-25334983,25335256-25335339,
25335756-25335769
Length = 1348
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 52 LPEEISNKMKIPDLITGDFDSITEETLQKYKKKGYNQSL 90
LPE I K + + IT +FD+ E L+ +GYN ++
Sbjct: 751 LPERIYTKQIVKESITNEFDA--NELLKMVDTEGYNNNV 787
>04_04_1627 - 34867557-34870095,34870159-34870391,34871274-34871276
Length = 924
Score = 27.5 bits (58), Expect = 3.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 64 DLITGDFDSITEETLQKYKKKGYNQSLK 91
DL+ G+ +S+ LQ +KK+ Q LK
Sbjct: 93 DLVAGEEESVENSALQAFKKERNEQELK 120
>12_02_0761 -
22901121-22901917,22902111-22902707,22904282-22904358,
22906543-22907135,22907552-22908118,22908431-22908958,
22909115-22909432,22910622-22910656,22910986-22911301
Length = 1275
Score = 27.1 bits (57), Expect = 4.7
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 46 DQFLTRLPEEISN--KMK----IPDLITGDFDSITEETLQKYKKKGYNQSLKFGELVSTS 99
D F+ RLP+ I+N K+K I D IT ++ I EE +K KK ++ L S S
Sbjct: 362 DTFILRLPKTITNLRKLKYLRAIVDKIT--YEGIAEELPEKNSKKFFSVLAALSRLESLS 419
>11_06_0584 - 25220371-25222917
Length = 848
Score = 27.1 bits (57), Expect = 4.7
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 5 PSLRYAVLILNRPISQEEAFMKNFWEKATLRI---TVDGGALRWDQFLTRLPEEISNKMK 61
PSL+Y L +SQ M TL I V G A+R D FL L + ++
Sbjct: 487 PSLKYLSLRKTN-VSQLPKKMNRLLHLETLDIRDTNVRGAAMR-DIFLNELKHLLVGRIF 544
Query: 62 IPDLITGD 69
IPD GD
Sbjct: 545 IPDAAAGD 552
>06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089
Length = 681
Score = 26.6 bits (56), Expect = 6.2
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 31 KATLRITVDGGALRWDQFLTRLPEEISNKM-KIPDLITGD---FDSITEETLQKYKKKGY 86
KA + +DG + WD E+ K K D T + ITEETL+++KK+
Sbjct: 177 KADIDAKIDGFSSDWDSDWDEEMEDEEEKWRKELDGFTPPGVGYGKITEETLERWKKEKL 236
Query: 87 NQS 89
++S
Sbjct: 237 SKS 239
>05_03_0190 +
9485701-9485806,9487182-9487368,9489662-9489733,
9490089-9490160,9490514-9490585,9490845-9490916,
9491355-9491426,9491503-9491577,9492008-9492073,
9492144-9492188,9492276-9492340,9492429-9492811,
9492878-9493076,9493150-9493308,9493386-9493504,
9493652-9493862,9493993-9494224,9494307-9494457,
9494550-9494870
Length = 892
Score = 26.6 bits (56), Expect = 6.2
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 45 WDQFLTRLPEEISNKMKIPDLITGDFDSITEETLQKYKKKGYNQSLKFGELVSTSNA 101
++ F LPEE+ N +K+ L D D T + + + ++ G++V+ S++
Sbjct: 150 FNNFTGELPEELGNLVKLEQLRAQDND-FTGKIPDNFGSMSSLEDMRIGDIVNGSSS 205
>04_04_0682 - 27229936-27231087,27231954-27232337
Length = 511
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 70 FDSITEETLQKYKKKGYNQSLKFGELVSTSNAFDGSDTVKIKC 112
F + E+TL ++ +KG N E++ T+ DG + + C
Sbjct: 403 FVTKAEQTLNRFVEKGGNPKPNTWEILGTAYLKDGQSSEALSC 445
>03_05_0190 -
21770610-21770641,21770741-21770811,21771058-21771168,
21771249-21771500,21771584-21772086,21772188-21773234,
21773361-21773768,21773814-21773956,21774020-21774053
Length = 866
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 39 DGGALRWDQFLT--RLPEEISNKMKIPDL 65
DG WD FLT PEEI K +L
Sbjct: 190 DGSEAAWDDFLTLKNSPEEIQRSQKYAEL 218
>03_05_0776 +
27625122-27625415,27627226-27627273,27627455-27627514,
27627633-27627802,27627901-27627973,27628096-27628161,
27628262-27628345,27628681-27628758,27629009-27629092,
27629835-27630137,27630227-27630397,27630971-27631161,
27631284-27631686,27632246-27632497,27632577-27633077,
27633181-27633278,27633400-27633499,27633722-27633867,
27633973-27634138
Length = 1095
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 69 DFDSITEETLQKYKKKGYNQSLKFGELVS 97
D+ I EET+ K GYN +++FG L+S
Sbjct: 321 DYLEIKEETMLKVP--GYNTTVQFGVLIS 347
>03_02_0803 +
11365959-11366390,11366470-11366502,11367158-11367214,
11367784-11367945,11367987-11368139,11368218-11368295,
11368377-11368469,11368981-11369071,11369091-11369209
Length = 405
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 57 SNKMKIPDLITGDFDSITEETLQKYKKKGYNQSLKFGELVSTSNAFDGSD 106
+NK+ + D IT D D + L Y KK + + ++ ++ FDG D
Sbjct: 226 NNKVLLLDEITVDLDVLARANLLTYLKKECEE--RGATIIYATHIFDGLD 273
>03_01_0081 +
645214-645228,645791-645856,645973-646142,646265-646319,
646434-646499,646604-646687,647091-647168,647425-647508,
648000-648302,648402-648572,649098-649288,649406-649808,
650368-650619,650696-651196,651306-651403,651810-651911,
652016-652178
Length = 933
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 69 DFDSITEETLQKYKKKGYNQSLKFGELVS 97
D+ I EET+ K GYN +++FG L+S
Sbjct: 208 DYLDIKEETMLKVP--GYNTTVQFGVLIS 234
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.133 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,731,164
Number of Sequences: 37544
Number of extensions: 134411
Number of successful extensions: 316
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 309
Number of HSP's gapped (non-prelim): 15
length of query: 128
length of database: 14,793,348
effective HSP length: 74
effective length of query: 54
effective length of database: 12,015,092
effective search space: 648814968
effective search space used: 648814968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)
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