GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002431-TA|BGIBMGA002431-PA|IPR007371|Thiamin
pyrophosphokinase, catalytic region, IPR007373|Thiamin
pyrophosphokinase, vitamin B1-binding region
         (128 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578797-1|AAT07302.1|  304|Anopheles gambiae activin protein.         24   1.4  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    22   7.6  

>AY578797-1|AAT07302.1|  304|Anopheles gambiae activin protein.
          Length = 304

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 38  VDGGALRWDQFLTRLPEEISNKMKIPDLITGDFDSITEETLQKYKKKG 85
           VD  AL+WD ++ R     +N  K    +   F S     + +Y+++G
Sbjct: 187 VDFKALKWDDWIIRPHGYYANYCKGSCHLADRFSSEYHYVIDQYRRQG 234


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)

Query: 97  STSNAFDGSDTVKIKCSH 114
           +TS A DG  T   KC H
Sbjct: 292 TTSTALDGQRTRVCKCMH 309


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.316    0.133    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,678
Number of Sequences: 2123
Number of extensions: 4988
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 2
length of query: 128
length of database: 516,269
effective HSP length: 57
effective length of query: 71
effective length of database: 395,258
effective search space: 28063318
effective search space used: 28063318
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)