GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002431-TA|BGIBMGA002431-PA|IPR007371|Thiamin
pyrophosphokinase, catalytic region, IPR007373|Thiamin
pyrophosphokinase, vitamin B1-binding region
         (128 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089282-1|AAL90020.1|  345|Drosophila melanogaster AT07857p pro...    52   2e-07
AE014297-1367|AAF54690.2|  345|Drosophila melanogaster CG14721-P...    52   2e-07
AY094848-1|AAM11201.1|  324|Drosophila melanogaster RE06583p pro...    29   2.5  
AY061149-1|AAL28697.1|  326|Drosophila melanogaster LD12265p pro...    29   2.5  
AE014134-2799|AAN10975.1|  324|Drosophila melanogaster CG31810-P...    29   2.5  
AE014134-463|AAF51213.2|  326|Drosophila melanogaster CG3077-PA ...    29   2.5  

>AY089282-1|AAL90020.1|  345|Drosophila melanogaster AT07857p
           protein.
          Length = 345

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 7/81 (8%)

Query: 9   YAVLILNRPISQEEAFMKNFWEKATLRITVDGGALRWDQFLTRLPEEISNKMKIP----- 63
           +  ++LNR I      +K  W+ A +R  VDGG+  W  F+             P     
Sbjct: 99  HVCVVLNRQIQVPAHVVKLLWKNAAVRCAVDGGSNHWRDFVVAQAMSKKANGSAPTTPLE 158

Query: 64  --DLITGDFDSITEETLQKYK 82
             D+ITGDFDSITEET+  +K
Sbjct: 159 PLDVITGDFDSITEETVDFFK 179



 Score = 32.3 bits (70), Expect = 0.20
 Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 86  YNQSLKFGELVSTSNAFDGSDTVKIKCSHTILWSM 120
           Y+  L+FG +VSTSN +  ++ V+++    ++WSM
Sbjct: 297 YHAQLEFGGMVSTSNTY-ATEFVQVETDANLIWSM 330


>AE014297-1367|AAF54690.2|  345|Drosophila melanogaster CG14721-PA
           protein.
          Length = 345

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 7/81 (8%)

Query: 9   YAVLILNRPISQEEAFMKNFWEKATLRITVDGGALRWDQFLTRLPEEISNKMKIP----- 63
           +  ++LNR I      +K  W+ A +R  VDGG+  W  F+             P     
Sbjct: 99  HVCVVLNRQIQVPAHVVKLLWKNAAVRCAVDGGSNHWRDFVVAQAMSKKANGSAPTTPLE 158

Query: 64  --DLITGDFDSITEETLQKYK 82
             D+ITGDFDSITEET+  +K
Sbjct: 159 PLDVITGDFDSITEETVDFFK 179



 Score = 32.3 bits (70), Expect = 0.20
 Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 86  YNQSLKFGELVSTSNAFDGSDTVKIKCSHTILWSM 120
           Y+  L+FG +VSTSN +  ++ V+++    ++WSM
Sbjct: 297 YHAQLEFGGMVSTSNTY-ATEFVQVETDANLIWSM 330


>AY094848-1|AAM11201.1|  324|Drosophila melanogaster RE06583p
           protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 48  FLTRLPEEISNKMKIPDLITGDFDSITEETLQKYKKKGYN---QSLKFGELVSTSNAFDG 104
           F   LP+ ++ K     ++TG  D I +E  ++  ++G N    S K  +L++ +N    
Sbjct: 43  FRPNLPKTLAEKFGNWAVVTGATDGIGKEYARELARQGLNLVLVSRKEEKLIAVTNEIGS 102

Query: 105 SDTVKIK 111
              VKIK
Sbjct: 103 QYNVKIK 109


>AY061149-1|AAL28697.1|  326|Drosophila melanogaster LD12265p
           protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 9/83 (10%)

Query: 3   NKPSLRYAVLILNRPISQEEAFMKNFWEKAT---LRITVDGG-ALRWDQFLTRL----PE 54
           + P++  A L +  P S ++A  K  WE+AT    + T DG   LR+D  L  +     E
Sbjct: 28  DSPAIEAAALDIPPPES-DKALQKGVWERATSAEYKPTTDGSTVLRFDILLAHIMPPDGE 86

Query: 55  EISNKMKIPDLITGDFDSITEET 77
           ++  K  +   +T   D  TE+T
Sbjct: 87  DVKIKRFVVYELTVKQDGATEDT 109


>AE014134-2799|AAN10975.1|  324|Drosophila melanogaster CG31810-PA
           protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 48  FLTRLPEEISNKMKIPDLITGDFDSITEETLQKYKKKGYN---QSLKFGELVSTSNAFDG 104
           F   LP+ ++ K     ++TG  D I +E  ++  ++G N    S K  +L++ +N    
Sbjct: 43  FRPNLPKTLAEKFGNWAVVTGATDGIGKEYARELARQGLNLVLVSRKEEKLIAVTNEIGS 102

Query: 105 SDTVKIK 111
              VKIK
Sbjct: 103 QYNVKIK 109


>AE014134-463|AAF51213.2|  326|Drosophila melanogaster CG3077-PA
           protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 9/83 (10%)

Query: 3   NKPSLRYAVLILNRPISQEEAFMKNFWEKAT---LRITVDGG-ALRWDQFLTRL----PE 54
           + P++  A L +  P S ++A  K  WE+AT    + T DG   LR+D  L  +     E
Sbjct: 28  DSPAIEAAALDIPPPES-DKALQKGVWERATSAEYKPTTDGSTVLRFDILLAHIMPPDGE 86

Query: 55  EISNKMKIPDLITGDFDSITEET 77
           ++  K  +   +T   D  TE+T
Sbjct: 87  DVKIKRFVVYELTVKQDGATEDT 109


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.316    0.133    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,071,674
Number of Sequences: 52641
Number of extensions: 217461
Number of successful extensions: 543
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 537
Number of HSP's gapped (non-prelim): 8
length of query: 128
length of database: 24,830,863
effective HSP length: 77
effective length of query: 51
effective length of database: 20,777,506
effective search space: 1059652806
effective search space used: 1059652806
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)