GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002431-TA|BGIBMGA002431-PA|IPR007371|Thiamin
pyrophosphokinase, catalytic region, IPR007373|Thiamin
pyrophosphokinase, vitamin B1-binding region
         (128 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z11115-18|CAI46594.1|  243|Caenorhabditis elegans Hypothetical p...    31   0.33 
Z11115-17|CAA77455.3|  228|Caenorhabditis elegans Hypothetical p...    31   0.33 
AY513235-1|AAS21678.1|  228|Caenorhabditis elegans thiamine pyro...    31   0.33 
Z81476-2|CAB03918.1| 1469|Caenorhabditis elegans Hypothetical pr...    30   0.44 
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ...    30   0.44 
Z68753-6|CAD45610.1|  597|Caenorhabditis elegans Hypothetical pr...    29   1.0  
Z68753-5|CAB54512.2|  613|Caenorhabditis elegans Hypothetical pr...    29   1.0  
Z68753-4|CAB54511.2|  606|Caenorhabditis elegans Hypothetical pr...    29   1.0  
AY043268-1|AAK85706.1|  606|Caenorhabditis elegans CCR4 protein.       29   1.0  
AF101310-4|AAC69214.2|  662|Caenorhabditis elegans Hypothetical ...    29   1.0  
AF036694-3|AAB88343.3|  344|Caenorhabditis elegans Hypothetical ...    29   1.3  
AL033514-8|CAA22114.1|  648|Caenorhabditis elegans Hypothetical ...    28   1.8  
AC006625-4|AAK68276.1|  446|Caenorhabditis elegans Hypothetical ...    28   1.8  

>Z11115-18|CAI46594.1|  243|Caenorhabditis elegans Hypothetical
          protein ZK637.9b protein.
          Length = 243

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 8/58 (13%)

Query: 26 KNFWEKATLRITVDGGALRWDQFLTRLPEEISNKMKIPDLITGDFDSITEETLQKYKK 83
          +N W KA  R+  DG     ++ L R      + ++ P +I GDFDSI ++   K  K
Sbjct: 34 ENLWNKAKYRVATDGAV---NEILKR-----KSFVEWPHIICGDFDSINKQIDTKNAK 83



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 14/36 (38%), Positives = 26/36 (72%), Gaps = 1/36 (2%)

Query: 87  NQSLKFGELVSTSNAFDGSDTVKIKCSHTILWSMKV 122
           N +L+FG+L+STSN    S  V +K S ++++S+++
Sbjct: 199 NLALEFGKLISTSNEVTTSQ-VFLKSSSSLIFSIEL 233


>Z11115-17|CAA77455.3|  228|Caenorhabditis elegans Hypothetical
          protein ZK637.9a protein.
          Length = 228

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 8/58 (13%)

Query: 26 KNFWEKATLRITVDGGALRWDQFLTRLPEEISNKMKIPDLITGDFDSITEETLQKYKK 83
          +N W KA  R+  DG     ++ L R      + ++ P +I GDFDSI ++   K  K
Sbjct: 34 ENLWNKAKYRVATDGAV---NEILKR-----KSFVEWPHIICGDFDSINKQIDTKNAK 83



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 14/36 (38%), Positives = 26/36 (72%), Gaps = 1/36 (2%)

Query: 87  NQSLKFGELVSTSNAFDGSDTVKIKCSHTILWSMKV 122
           N +L+FG+L+STSN    S  V +K S ++++S+++
Sbjct: 184 NLALEFGKLISTSNEVTTSQ-VFLKSSSSLIFSIEL 218


>AY513235-1|AAS21678.1|  228|Caenorhabditis elegans thiamine
          pyrophosphokinase protein.
          Length = 228

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 8/58 (13%)

Query: 26 KNFWEKATLRITVDGGALRWDQFLTRLPEEISNKMKIPDLITGDFDSITEETLQKYKK 83
          +N W KA  R+  DG     ++ L R      + ++ P +I GDFDSI ++   K  K
Sbjct: 34 ENLWNKAKYRVATDGAV---NEILKR-----KSFVEWPHIICGDFDSINKQIDTKNAK 83



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 14/36 (38%), Positives = 26/36 (72%), Gaps = 1/36 (2%)

Query: 87  NQSLKFGELVSTSNAFDGSDTVKIKCSHTILWSMKV 122
           N +L+FG+L+STSN    S  V +K S ++++S+++
Sbjct: 184 NLALEFGKLISTSNEVTTSQ-VFLKSSSSLIFSIEL 218


>Z81476-2|CAB03918.1| 1469|Caenorhabditis elegans Hypothetical protein
            C25F9.2 protein.
          Length = 1469

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 55   EISNKMKIPDLITGDFDSITEETLQKYKKKGYNQSLKFGELVSTSNAFDGSDTVKIKCSH 114
            E   K+ I +LI  D DS+  + +Q     G  +  + G L  T+   +G   V++ C  
Sbjct: 1296 EAMEKVGIENLIYCDTDSLIFKQIQGMDPLGDMKGTQLGAL--TNEIPEGKKLVEVVCMT 1353

Query: 115  TILWSMKVPSLTGE 128
              ++S+K+  + GE
Sbjct: 1354 PKVYSLKMEDVNGE 1367


>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
           protein Y108G3AL.7 protein.
          Length = 1192

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 16  RPISQEEAFMKNFWEKATLRITVDGGALRWDQFLTRLPEEISNKMKIPDLITGDFDSITE 75
           R +S E   +K    K++ R T        D+F  + P++  +   +PD +T   D + E
Sbjct: 837 RKVSSESVQLKKRNRKSSSRATTASPGPSEDRFSFQRPQDSDDVTDVPDDMTDHEDLLPE 896

Query: 76  -ETLQKYKKK 84
             T +KY++K
Sbjct: 897 AATRKKYERK 906


>Z68753-6|CAD45610.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC518.3c protein.
          Length = 597

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 5/42 (11%)

Query: 49  LTRLPEEISNKMKI-----PDLITGDFDSITEETLQKYKKKG 85
           ++R+ EE+S K +I     P LI GDF+S+ +  + +Y  KG
Sbjct: 410 VSRVLEEVSKKYQITQQQVPVLICGDFNSLPDSGVFEYLSKG 451


>Z68753-5|CAB54512.2|  613|Caenorhabditis elegans Hypothetical
           protein ZC518.3b protein.
          Length = 613

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 5/42 (11%)

Query: 49  LTRLPEEISNKMKI-----PDLITGDFDSITEETLQKYKKKG 85
           ++R+ EE+S K +I     P LI GDF+S+ +  + +Y  KG
Sbjct: 426 VSRVLEEVSKKYQITQQQVPVLICGDFNSLPDSGVFEYLSKG 467


>Z68753-4|CAB54511.2|  606|Caenorhabditis elegans Hypothetical
           protein ZC518.3a protein.
          Length = 606

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 5/42 (11%)

Query: 49  LTRLPEEISNKMKI-----PDLITGDFDSITEETLQKYKKKG 85
           ++R+ EE+S K +I     P LI GDF+S+ +  + +Y  KG
Sbjct: 419 VSRVLEEVSKKYQITQQQVPVLICGDFNSLPDSGVFEYLSKG 460


>AY043268-1|AAK85706.1|  606|Caenorhabditis elegans CCR4 protein.
          Length = 606

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 5/42 (11%)

Query: 49  LTRLPEEISNKMKI-----PDLITGDFDSITEETLQKYKKKG 85
           ++R+ EE+S K +I     P LI GDF+S+ +  + +Y  KG
Sbjct: 419 VSRVLEEVSKKYQITQQQVPVLICGDFNSLPDSGVFEYLSKG 460


>AF101310-4|AAC69214.2|  662|Caenorhabditis elegans Hypothetical
           protein C39F7.5 protein.
          Length = 662

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 8/68 (11%)

Query: 53  PEEISNKMKIPDLITGDFDSITEETLQKYKKKGYNQSLKFGEL----VSTSNAFDGSDTV 108
           PE + ++M +  L T DF    +  L++  K  Y Q LK G+L    V   N  + S++ 
Sbjct: 178 PENLGSEM-LEQLCT-DFGCFKK--LEEDVKHMYKQDLKHGDLIIEVVDGKNTEENSESF 233

Query: 109 KIKCSHTI 116
           KI+CS  I
Sbjct: 234 KIRCSSLI 241


>AF036694-3|AAB88343.3|  344|Caenorhabditis elegans Hypothetical
           protein CD4.5 protein.
          Length = 344

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 46  DQFLTRLPEEISNKMKIPDLITGDFDSITEETLQKYKKKGYN 87
           +Q +   PE+ ++   +P LITGD    T+ T+QK+ ++  N
Sbjct: 97  EQSVEPFPEDTNSSSTVPSLITGD-PLPTDPTIQKFFEEDGN 137


>AL033514-8|CAA22114.1|  648|Caenorhabditis elegans Hypothetical
           protein Y75B8A.7 protein.
          Length = 648

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 53  PEEISNKMKIPDLITGDFDSITEETLQKYKKKGYNQSL--KFGE 94
           PEEIS KMK  +    + D+ T++  ++ +KK   +S+  KFGE
Sbjct: 532 PEEISKKMKAIEKSKDERDA-TDKARERRQKKAKQRSMLEKFGE 574


>AC006625-4|AAK68276.1|  446|Caenorhabditis elegans Hypothetical
           protein C55B7.5 protein.
          Length = 446

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 71  DSITEETLQKYKKKGYNQSLKFGELVSTSNAFDGSDTVKIKCSHTIL 117
           + I EET+ K   K     ++F + +     F  +DTV+IK   +++
Sbjct: 327 EEIVEETVTKTTVKRKKSGVRFAQQLENVKTFHQTDTVEIKEEDSVI 373


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.133    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,170,473
Number of Sequences: 27539
Number of extensions: 118101
Number of successful extensions: 325
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 16
length of query: 128
length of database: 12,573,161
effective HSP length: 74
effective length of query: 54
effective length of database: 10,535,275
effective search space: 568904850
effective search space used: 568904850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)