GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002431-TA|BGIBMGA002431-PA|IPR007371|Thiamin
pyrophosphokinase, catalytic region, IPR007373|Thiamin
pyrophosphokinase, vitamin B1-binding region
         (128 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    26   0.11 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    26   0.11 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   1.9  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   2.5  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   2.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   10.0 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   10.0 

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 26.2 bits (55), Expect = 0.11
 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 5/26 (19%)

Query: 25  MKNFWEKATLRITVDG----GALRWD 46
           +K FWE+ TL+I+ DG    G++RW+
Sbjct: 184 VKEFWERRTLQIS-DGIENIGSIRWE 208


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 26.2 bits (55), Expect = 0.11
 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 5/26 (19%)

Query: 25  MKNFWEKATLRITVDG----GALRWD 46
           +K FWE+ TL+I+ DG    G++RW+
Sbjct: 237 VKEFWERRTLQIS-DGIENIGSIRWE 261


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 5/37 (13%)

Query: 14  LNRPISQEEAFMKNFWEKATLRITVDG----GALRWD 46
           +N  I++    +K FWE+  L+I+ +G    G +RW+
Sbjct: 140 VNMTITELTDPVKEFWERRALQIS-EGVEYVGNIRWE 175


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 54  EEISNKMKIPDLITGDFDSITEETLQKYKKKGYNQSL 90
           +E+ +  KI D+       + +E L+  KKKG N  +
Sbjct: 103 DEVLDWKKIFDINLLGLTCMIQEVLKLMKKKGINNGI 139


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 76  ETLQKYKKKGYNQSLKFGELVSTSNAFDGSDTVK 109
           E + K +  G    ++F      SNAF G++ +K
Sbjct: 251 EAISKREYNGIGAVIEFKYSYEISNAFRGNNNLK 284


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 73  ITEETLQKYKKKGYNQSLKFGEL 95
           ITE    +Y+ K +++ L  GEL
Sbjct: 412 ITEYFEHRYQGKFFDEELILGEL 434


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 73  ITEETLQKYKKKGYNQSLKFGEL 95
           ITE    +Y+ K +++ L  GEL
Sbjct: 380 ITEYFEHRYQGKFFDEELILGEL 402


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,614
Number of Sequences: 429
Number of extensions: 1150
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 128
length of database: 140,377
effective HSP length: 51
effective length of query: 77
effective length of database: 118,498
effective search space:  9124346
effective search space used:  9124346
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)
S2: 39 (19.8 bits)