GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002430-TA|BGIBMGA002430-PA|IPR007114|Major facilitator
superfamily, IPR005988|Synaptic vesicle protein SV2, IPR011701|Major
facilitator superfamily MFS_1
         (536 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY534995-1|AAT07393.1|  461|Anopheles gambiae XK-related protein.      29   0.31 
DQ004399-1|AAY21238.1|  847|Anopheles gambiae lysozyme c-6 protein.    24   8.9  

>AY534995-1|AAT07393.1|  461|Anopheles gambiae XK-related protein.
          Length = 461

 Score = 29.1 bits (62), Expect = 0.31
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 4/29 (13%)

Query: 214 AACGVPSLLLGFWLFSFPESPKFMMECGD 242
           AAC V +LL+  W+F + E P+F   CGD
Sbjct: 327 AACAVHALLMATWVFCY-ERPRF---CGD 351


>DQ004399-1|AAY21238.1|  847|Anopheles gambiae lysozyme c-6 protein.
          Length = 847

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)

Query: 238 MECGDYDDALKCLKSVYRQNTGDDPDNY 265
           +E  D  D ++C+K++Y ++T    D +
Sbjct: 733 LEDNDLTDDVECMKTIYEEHTRLSGDGF 760


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.328    0.143    0.460 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 515,231
Number of Sequences: 2123
Number of extensions: 20265
Number of successful extensions: 29
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 3
length of query: 536
length of database: 516,269
effective HSP length: 67
effective length of query: 469
effective length of database: 374,028
effective search space: 175419132
effective search space used: 175419132
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 50 (24.2 bits)