GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002430-TA|BGIBMGA002430-PA|IPR007114|Major facilitator
superfamily, IPR005988|Synaptic vesicle protein SV2, IPR011701|Major
facilitator superfamily MFS_1
         (536 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   1.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   1.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       25   1.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    25   1.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   6.4  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 321 YTILTCLIQFGLTTSYYTLMIWFP 344
           Y+ L C IQF  +  YY + I+ P
Sbjct: 207 YSRLACEIQFVRSMGYYLIQIYIP 230


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 321 YTILTCLIQFGLTTSYYTLMIWFP 344
           Y+ L C IQF  +  YY + I+ P
Sbjct: 207 YSRLACEIQFVRSMGYYLIQIYIP 230


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 294 RKRKDLKRLFTEIWTQTKALCRPPYLKYTILTCLIQFGLTTSYYTLMIWF 343
           +K +D K   + I   T+A  R   LK T++   + F   T YY + +W+
Sbjct: 236 KKSEDDKIRRSSIGFLTRAKIRT--LKMTVIIIAVFFICWTPYYVMSLWY 283


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 321 YTILTCLIQFGLTTSYYTLMIWFP 344
           Y+ L C IQF  +  YY + I+ P
Sbjct: 146 YSRLACEIQFVRSMGYYLIQIYIP 169


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 298 DLKRLFTEIWTQTKALCRPPYLKYTILTC--------LIQFGLTTSYYTLMIWFPELFNR 349
           D KRL+ ++ +    L RP       LT         LI+  L     T  +W  + +N 
Sbjct: 33  DTKRLYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWND 92

Query: 350 YE 351
           Y+
Sbjct: 93  YK 94


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.143    0.460 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,805
Number of Sequences: 429
Number of extensions: 5785
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 5
length of query: 536
length of database: 140,377
effective HSP length: 61
effective length of query: 475
effective length of database: 114,208
effective search space: 54248800
effective search space used: 54248800
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 46 (22.6 bits)