Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002429-TA|BGIBMGA002429-PA|IPR002130|Peptidyl-prolyl
cis-trans isomerase, cyclophilin type
(165 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0359 + 22508900-22509439 241 1e-64
02_01_0160 + 1116160-1116678 239 8e-64
06_03_1341 + 29458085-29458198,29458448-29458526,29458923-294589... 228 1e-60
05_01_0022 + 154399-154428,154528-154716,155469-155619,155724-15... 227 3e-60
06_03_1340 + 29455210-29455290,29455493-29455571,29455767-294558... 206 7e-54
10_01_0309 + 3417602-3418147 194 2e-50
01_02_0015 + 10191793-10191957,10192085-10192229,10192331-101924... 186 1e-47
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 179 1e-45
02_05_0830 + 32066419-32066676,32067779-32067820,32068375-320688... 178 2e-45
09_06_0098 + 20850535-20850612,20851258-20851333,20851474-208515... 155 2e-38
06_01_0798 - 5944815-5944888,5945084-5945243,5945319-5945356,594... 148 3e-36
08_02_1563 + 27886202-27886446,27886533-27886618,27886942-278870... 136 6e-33
08_02_1578 - 27992848-27992893,27993431-27993515,27994107-279942... 136 1e-32
03_06_0417 - 33782577-33782687,33782996-33783052,33783110-337832... 130 4e-31
03_02_0048 - 5265595-5265783,5265882-5265992,5266259-5266547,526... 125 2e-29
06_01_0214 + 1634171-1634173,1634263-1634742 123 8e-29
01_05_0478 - 22587881-22588021,22588126-22588266,22588436-225886... 99 2e-21
06_03_1076 + 27409107-27409204,27409731-27409835,27409915-274100... 93 1e-19
07_03_0359 - 17201711-17201803,17202185-17202332,17202437-172025... 71 6e-13
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 66 1e-11
02_01_0086 + 613113-613532 65 2e-11
06_03_1075 + 27399279-27399376,27399449-27399555,27400791-274008... 57 6e-09
08_02_0053 + 11721658-11721689,11721960-11722710 50 9e-07
01_01_0077 - 585670-585787,585921-586687 42 2e-04
11_06_0322 + 22358505-22358642,22358690-22358791,22359444-223595... 37 0.007
10_01_0310 + 3425099-3425218 37 0.009
04_04_1323 + 32644956-32645096,32645488-32646126,32646701-326469... 27 5.7
01_06_0862 - 32532905-32533076,32534289-32534848 27 5.7
07_03_0831 - 21810002-21810319,21810423-21810573,21810660-218108... 27 7.5
04_04_1613 - 34779640-34779747,34780086-34780151,34781155-347812... 27 7.5
05_04_0173 + 18724367-18724476,18724570-18724651,18724750-187248... 27 10.0
>09_06_0359 + 22508900-22509439
Length = 179
Score = 241 bits (591), Expect = 1e-64
Identities = 108/169 (63%), Positives = 135/169 (79%), Gaps = 7/169 (4%)
Query: 4 PRVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFG-------YKGSIFHRV 56
P+VFFD+ + A G++V+EL +D PKT ENFR LCTGEKG G YKGS FHR+
Sbjct: 6 PKVFFDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHRI 65
Query: 57 IPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGADTNGSQFFITT 116
IPNFM QGGDFT NGTGG+SIYG++F DENF L+HTGPG+LSMANAG +TNGSQFFI T
Sbjct: 66 IPNFMCQGGDFTRGNGTGGESIYGDRFADENFKLRHTGPGVLSMANAGPNTNGSQFFICT 125
Query: 117 VKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQIA 165
+T+WLDG+HVVFG VV+G VV+++E GS SG T++R++I+DCGQ+A
Sbjct: 126 TRTTWLDGKHVVFGKVVDGYTVVEKMEQVGSGSGGTAERVLIEDCGQLA 174
>02_01_0160 + 1116160-1116678
Length = 172
Score = 239 bits (585), Expect = 8e-64
Identities = 116/172 (67%), Positives = 130/172 (75%), Gaps = 7/172 (4%)
Query: 1 MSLPRVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFG-------YKGSIF 53
MS RVFFD+TV AP G+IV+EL + P+T ENFRALCTGEKG G YKGS F
Sbjct: 1 MSNTRVFFDMTVGGAPAGRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTF 60
Query: 54 HRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGADTNGSQFF 113
HRVIP FM QGGDFT NGTGG+SIYG KF DE F KH PGILSMANAG +TNGSQFF
Sbjct: 61 HRVIPEFMCQGGDFTRGNGTGGESIYGEKFADEVFKFKHDSPGILSMANAGPNTNGSQFF 120
Query: 114 ITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQIA 165
I TV SWLDG+HVVFG VVEGM+VVK IE GS+ G T+K +VI DCGQ++
Sbjct: 121 ICTVPCSWLDGKHVVFGRVVEGMDVVKAIEKVGSRGGSTAKPVVIADCGQLS 172
>06_03_1341 +
29458085-29458198,29458448-29458526,29458923-29458970,
29459064-29459087,29459554-29459736,29459845-29459920,
29460020-29460158
Length = 220
Score = 228 bits (558), Expect = 1e-60
Identities = 105/167 (62%), Positives = 127/167 (76%), Gaps = 7/167 (4%)
Query: 5 RVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFG-------YKGSIFHRVI 57
+V+FDV +D P G++V+ L PKT ENFRALCTGEKG G +KGS FHR+I
Sbjct: 52 KVYFDVEIDGKPAGRVVMGLFGKTVPKTAENFRALCTGEKGTGKSGKALHFKGSAFHRII 111
Query: 58 PNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGADTNGSQFFITTV 117
P+FM+QGGDFT +G GG+SIYG KF DENF +KHTGPG+LSMANAG DTNGSQFFITTV
Sbjct: 112 PSFMIQGGDFTLGDGRGGESIYGTKFADENFKIKHTGPGLLSMANAGRDTNGSQFFITTV 171
Query: 118 KTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQI 164
TSWLDG+HVVFG V+ GM+VV +IE G QSG ++VI D G++
Sbjct: 172 TTSWLDGKHVVFGKVLSGMDVVYKIEAEGQQSGSPKSKVVIADSGEL 218
>05_01_0022 +
154399-154428,154528-154716,155469-155619,155724-155812,
156391-156445,156533-156618,156705-156857
Length = 250
Score = 227 bits (556), Expect = 3e-60
Identities = 103/164 (62%), Positives = 130/164 (79%), Gaps = 4/164 (2%)
Query: 5 RVFFDVTVDDAP---LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFM 61
+V+FD+++ + +G++VI L D P+T ENFRALCTGEKGFGYKGS FHRVI +FM
Sbjct: 84 KVYFDISIGNPVGKNVGRVVIGLYGDDVPQTAENFRALCTGEKGFGYKGSSFHRVIKDFM 143
Query: 62 LQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGADTNGSQFFITTVKTSW 121
+QGGDF NGTGGKSIYG F+DENF L HTGPG++SMANAG +TNGSQFFI TVKT W
Sbjct: 144 IQGGDFDKGNGTGGKSIYGRTFKDENFKLVHTGPGVVSMANAGPNTNGSQFFICTVKTPW 203
Query: 122 LDGRHVVFGNVVEGMEVVKQIETFGSQSG-KTSKRIVIKDCGQI 164
LDGRHVVFG V+EGM++VK IE+ + G + K++VI +CG++
Sbjct: 204 LDGRHVVFGQVIEGMDIVKMIESQETDRGDRPKKKVVISECGEL 247
>06_03_1340 +
29455210-29455290,29455493-29455571,29455767-29455814,
29455908-29455931,29456433-29456615,29456730-29456805,
29456937-29457072
Length = 208
Score = 206 bits (503), Expect = 7e-54
Identities = 96/167 (57%), Positives = 121/167 (72%), Gaps = 7/167 (4%)
Query: 5 RVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFG-------YKGSIFHRVI 57
+VFFD+T++ P G+IV+ L + PKT ENFRA+CTGEKG G YKG+ FHR+I
Sbjct: 41 KVFFDITINGKPAGRIVMGLFGNTVPKTAENFRAICTGEKGLGKSGKPLSYKGTPFHRII 100
Query: 58 PNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGADTNGSQFFITTV 117
P FM+QGGD + NGTG SIYG F DENF + H+ PG+LSMAN DTNGSQFFITTV
Sbjct: 101 PGFMIQGGDTVSGNGTGCDSIYGGMFPDENFKINHSAPGLLSMANYAKDTNGSQFFITTV 160
Query: 118 KTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQI 164
K + LDG+HVVFG V+ GM+VV +IE GSQSG +++I D G++
Sbjct: 161 KLTRLDGKHVVFGKVLSGMDVVYKIEAEGSQSGTPRSKVLISDSGEL 207
>10_01_0309 + 3417602-3418147
Length = 181
Score = 194 bits (474), Expect = 2e-50
Identities = 96/171 (56%), Positives = 113/171 (66%), Gaps = 10/171 (5%)
Query: 2 SLPRVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKG-------FGYKGSIFH 54
S PRVF D+ + +G++VIEL +D P T ENFR LCTGE+ YKGS FH
Sbjct: 9 SNPRVFLDIAIGGEWVGRVVIELLADKVPDTAENFRRLCTGERAGRSGKSRLHYKGSAFH 68
Query: 55 RVIPNFMLQGGDFTNHNGTGGKSIY---GNKFEDENFTLKHTGPGILSMANAGADTNGSQ 111
RV+P FM QGGD T NGTGG+S F DE F +KH GPG++SMANAG +TNGSQ
Sbjct: 69 RVVPGFMCQGGDITAGNGTGGESALDGAARHFPDEGFAVKHDGPGVVSMANAGPNTNGSQ 128
Query: 112 FFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCG 162
FFIT K WLDGRHV FG VV GM V+ I+ G+ SGKT K +VI DCG
Sbjct: 129 FFITVDKAPWLDGRHVAFGRVVAGMGAVRAIDRTGTWSGKTVKPVVITDCG 179
>01_02_0015 +
10191793-10191957,10192085-10192229,10192331-10192419,
10193009-10193063,10193607-10193692,10194006-10194065
Length = 199
Score = 186 bits (452), Expect = 1e-47
Identities = 83/116 (71%), Positives = 96/116 (82%)
Query: 5 RVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQG 64
+ FFDV V P G+IVI L +V PKT +NFRALCTG+KG+GYKG FHR+I +FM+QG
Sbjct: 67 KCFFDVEVGGEPAGRIVIGLFGEVVPKTVDNFRALCTGDKGYGYKGCSFHRIIKDFMIQG 126
Query: 65 GDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGADTNGSQFFITTVKTS 120
GDF N+NGTGG+SIYG F+DENFTLKHTGPG+LSMANAG DTNGSQFFI TVK S
Sbjct: 127 GDFQNNNGTGGRSIYGECFDDENFTLKHTGPGVLSMANAGPDTNGSQFFICTVKFS 182
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 179 bits (435), Expect = 1e-45
Identities = 93/172 (54%), Positives = 117/172 (68%), Gaps = 12/172 (6%)
Query: 4 PRVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFG--------YKGSIFHR 55
P VF DV++ D P ++V EL +DV P+T ENFRALCTGE G G YKGS+FHR
Sbjct: 7 PIVFMDVSIGDEPDERMVFELFADVAPRTAENFRALCTGEMGIGQTSKKPLYYKGSLFHR 66
Query: 56 VIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGADTNGSQFFIT 115
VI FM QGGDF+N +G+GG+SIYG FEDENF L+H G+LSMANAG +TNGSQFFIT
Sbjct: 67 VIKGFMAQGGDFSNGDGSGGESIYGGTFEDENFVLRHDERGLLSMANAGPNTNGSQFFIT 126
Query: 116 TVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIV---IKDCGQI 164
S LD + VFG ++ G +V+K+IE + G S +V I DCG++
Sbjct: 127 FKHNSRLDRKSTVFGKLILGNDVLKRIE-YVDVHGAGSTPVVPVRIVDCGEL 177
>02_05_0830 +
32066419-32066676,32067779-32067820,32068375-32068875,
32069048-32069135,32069251-32069303,32069499-32069603,
32069886-32069961,32070038-32070075,32070162-32070242,
32070353-32070364
Length = 417
Score = 178 bits (434), Expect = 2e-45
Identities = 94/184 (51%), Positives = 117/184 (63%), Gaps = 23/184 (12%)
Query: 4 PRVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGY--------------- 48
PR + DV++ G+IV+EL + V P+T ENFRALCTGEKG
Sbjct: 33 PRCYLDVSIGGDMEGRIVVELYASVAPRTAENFRALCTGEKGVSAATGVPLHYKISLKAA 92
Query: 49 -------KGSIFHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMA 101
KGS HR++ FM+QGGD T +GTGG+SIYG FEDENF LKH G+LSMA
Sbjct: 93 SVCTRWTKGSCIHRIVKGFMVQGGDITAGDGTGGESIYGLNFEDENFVLKHERKGMLSMA 152
Query: 102 NAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFG-SQSGKTSKRIVIKD 160
NAG DTNGSQFFITT +T LDG+HVVFG V++GM VV+ +E +S + IVI D
Sbjct: 153 NAGPDTNGSQFFITTTRTPHLDGKHVVFGRVIKGMGVVRSMEHVSVGESDRPITDIVIVD 212
Query: 161 CGQI 164
CG++
Sbjct: 213 CGEL 216
>09_06_0098 +
20850535-20850612,20851258-20851333,20851474-20851521,
20851758-20851781,20851875-20851994,20852235-20852310,
20852385-20852547
Length = 194
Score = 155 bits (376), Expect = 2e-38
Identities = 83/168 (49%), Positives = 106/168 (63%), Gaps = 29/168 (17%)
Query: 5 RVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFG-------YKGSIFHRVI 57
RV+ DV +D +G+IVI L DV PKT NFRALCTGE+G G YKGS FHR+I
Sbjct: 39 RVYLDVEIDGQHIGRIVIGLYGDVVPKTVANFRALCTGEEGIGHKGKSLHYKGSRFHRII 98
Query: 58 PNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGADTNGSQFFITTV 117
P FM+QGGD +G G +++MAN+G D+NGSQF+ITT+
Sbjct: 99 PGFMIQGGDIVRGDGKGS---------------------VIAMANSGPDSNGSQFYITTI 137
Query: 118 KTSWLDGRHVVFGNVVEGMEVVKQIE-TFGSQSGKTSKRIVIKDCGQI 164
KTSWLDG HVVFG V++GM+ V IE G+ +GK K++VI D G+I
Sbjct: 138 KTSWLDGEHVVFGRVIQGMDYVYAIEGGAGTYNGKPRKKVVITDSGEI 185
>06_01_0798 -
5944815-5944888,5945084-5945243,5945319-5945356,
5945438-5945513,5946114-5946218,5947486-5947986,
5948638-5948710,5949550-5949593,5949938-5950174
Length = 435
Score = 148 bits (358), Expect = 3e-36
Identities = 70/122 (57%), Positives = 90/122 (73%), Gaps = 1/122 (0%)
Query: 44 KGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANA 103
K F +GS FHRVI FM+QGGD T +GTGG+SIYG KFEDENF LKH G+LSMAN+
Sbjct: 113 KIFHVQGSCFHRVIKGFMVQGGDITAGDGTGGESIYGLKFEDENFVLKHERKGMLSMANS 172
Query: 104 GADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFG-SQSGKTSKRIVIKDCG 162
G +TNGSQFFITT +T LDG+HVVFG V++GM VV+ +E ++ + + + I DCG
Sbjct: 173 GPNTNGSQFFITTTRTPHLDGKHVVFGRVIKGMGVVRSVEHAPVGEADRPTSDVEIVDCG 232
Query: 163 QI 164
++
Sbjct: 233 EL 234
Score = 60.1 bits (139), Expect = 9e-10
Identities = 27/44 (61%), Positives = 32/44 (72%)
Query: 4 PRVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFG 47
PR F DV++ G+IVIEL + V P+T ENFRALCTGEKG G
Sbjct: 26 PRCFMDVSIGGEIEGRIVIELYASVVPRTAENFRALCTGEKGVG 69
>08_02_1563 +
27886202-27886446,27886533-27886618,27886942-27887030,
27887193-27887432,27887527-27887648,27888103-27888178,
27888276-27888383,27888465-27888641,27888959-27889176,
27889313-27889445,27889584-27889807,27890052-27890205,
27890297-27890380
Length = 651
Score = 136 bits (330), Expect = 6e-33
Identities = 74/136 (54%), Positives = 91/136 (66%), Gaps = 5/136 (3%)
Query: 9 DVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFT 68
D V +G I + L + PKT ENF C G+ Y IFHRVI FM+Q GD
Sbjct: 496 DNLVMHTSMGDIHLRLYPEECPKTVENFTTHC--RNGY-YDNLIFHRVIKGFMIQTGDPL 552
Query: 69 NHNGTGGKSIYGNKFEDE-NFTLKHTGPGILSMANAGADTNGSQFFITTVKTSWLDGRHV 127
+GTGG+SI+G +FEDE + +L+H P LSMANAG +TNGSQFFITTV T WLD +H
Sbjct: 553 G-DGTGGQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHT 611
Query: 128 VFGNVVEGMEVVKQIE 143
VFG VV+GM+VV+QIE
Sbjct: 612 VFGRVVKGMDVVQQIE 627
>08_02_1578 -
27992848-27992893,27993431-27993515,27994107-27994240,
27994579-27994640,27994736-27994831,27994952-27995023
Length = 164
Score = 136 bits (328), Expect = 1e-32
Identities = 72/135 (53%), Positives = 92/135 (68%), Gaps = 6/135 (4%)
Query: 9 DVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFT 68
+VT++ + +G IE+ PKTC NF L +G+ Y IFHR+I +F++QGGD T
Sbjct: 11 EVTLETS-MGAFTIEMYYKHAPKTCRNFLEL--SRRGY-YDNVIFHRIIKDFIVQGGDPT 66
Query: 69 NHNGTGGKSIYGNKFEDE-NFTLKHTGPGILSMANAGADTNGSQFFITTVKTSWLDGRHV 127
G GG+SIYG KFEDE LKHTG GILSMANAG +TNGSQFFIT LDG+H
Sbjct: 67 G-TGRGGESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSLDGKHT 125
Query: 128 VFGNVVEGMEVVKQI 142
+FG V +GME+VK++
Sbjct: 126 IFGRVSKGMEIVKRL 140
>03_06_0417 -
33782577-33782687,33782996-33783052,33783110-33783205,
33783252-33783284,33783543-33783599,33783968-33784060,
33784308-33784395,33784812-33784835,33784956-33785164
Length = 255
Score = 130 bits (315), Expect = 4e-31
Identities = 62/105 (59%), Positives = 74/105 (70%), Gaps = 5/105 (4%)
Query: 4 PRVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGE---KGF--GYKGSIFHRVIP 58
P VFFDVT+ P G+I +EL +D+ PKT ENFR CTGE G GYKG FHRVI
Sbjct: 37 PVVFFDVTIGSIPAGRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQGYKGCQFHRVIK 96
Query: 59 NFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANA 103
+FM+QGGD+ +GTG SIYG KF+DENF KHTGPG+LSM +
Sbjct: 97 DFMIQGGDYMKGDGTGCTSIYGTKFDDENFIAKHTGPGLLSMVRS 141
Score = 50.4 bits (115), Expect = 7e-07
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 111 QFFITTVKTSWLDGRHVVFGNVV-EGMEVVKQIETFGSQSGKTSK-RIVIKDCGQI 164
QFFIT K WLD +HVVFG V+ +GM V++IE + K VI +CG++
Sbjct: 200 QFFITCAKCEWLDNKHVVFGRVLGDGMLAVRKIENVATGPNNRPKLACVISECGEM 255
>03_02_0048 -
5265595-5265783,5265882-5265992,5266259-5266547,
5266647-5266903,5266995-5267356,5267447-5267522,
5267618-5267707,5267800-5267891,5267995-5268098,
5268191-5268253,5268609-5268736
Length = 586
Score = 125 bits (301), Expect = 2e-29
Identities = 65/127 (51%), Positives = 84/127 (66%), Gaps = 5/127 (3%)
Query: 18 GKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKS 77
G + +EL D+TP+TCENF C E G+ Y G IFHR I NFM+QGGD T G+GG+S
Sbjct: 354 GDLNLELHCDITPRTCENFLTHC--ENGY-YNGLIFHRSIKNFMIQGGDPTG-TGSGGES 409
Query: 78 IYGNKFEDE-NFTLKHTGPGILSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGM 136
I+G F+DE N L H+G G++SMAN+G TNGSQFFI L+ +H VFG VV G+
Sbjct: 410 IWGKPFKDELNSKLIHSGRGVVSMANSGPHTNGSQFFILYKSAPHLNFKHTVFGMVVGGL 469
Query: 137 EVVKQIE 143
+ +E
Sbjct: 470 TTLSAME 476
>06_01_0214 + 1634171-1634173,1634263-1634742
Length = 160
Score = 123 bits (296), Expect = 8e-29
Identities = 66/128 (51%), Positives = 82/128 (64%), Gaps = 5/128 (3%)
Query: 17 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGK 76
LG I E+ D P+T ENF ALC G+ Y G+IFHR I FM+QGGD T G GG
Sbjct: 9 LGDIKCEVFCDQAPRTAENFLALCAS--GY-YDGTIFHRNIKGFMIQGGDPTG-TGKGGT 64
Query: 77 SIYGNKFEDE-NFTLKHTGPGILSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEG 135
SI+G KF DE +LKH G++SMAN+G +TNGSQFFIT K L+G + VF V+ G
Sbjct: 65 SIWGKKFADEFRESLKHNARGVMSMANSGPNTNGSQFFITYAKQPHLNGHYTVFAKVIHG 124
Query: 136 MEVVKQIE 143
EV+ +E
Sbjct: 125 FEVLDLME 132
>01_05_0478 -
22587881-22588021,22588126-22588266,22588436-22588643,
22589199-22589238,22589425-22589647,22590826-22590970,
22591053-22591156,22591298-22591396,22591506-22591684,
22591948-22592167
Length = 499
Score = 98.7 bits (235), Expect = 2e-21
Identities = 55/117 (47%), Positives = 75/117 (64%), Gaps = 6/117 (5%)
Query: 18 GKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKS 77
G + IEL PK NF LC +G+ Y G++FHRVI +F++QGGD T +GTGG+S
Sbjct: 22 GPLDIELWPKEAPKAVRNFVQLCL--EGY-YDGTLFHRVIKSFLVQGGDPTG-SGTGGES 77
Query: 78 IYGNKFEDENFT-LKHTGPGILSMANAGAD-TNGSQFFITTVKTSWLDGRHVVFGNV 132
IYG F DE T L+ G+++ ANAG +NGSQFFI+ + WLD ++ +FG V
Sbjct: 78 IYGAPFADEFHTRLRFNHRGLVACANAGTPHSNGSQFFISLDRCDWLDKKNTIFGKV 134
>06_03_1076 +
27409107-27409204,27409731-27409835,27409915-27410032,
27410180-27410230,27410328-27410419,27410558-27410657,
27411018-27411137,27411227-27411295,27411468-27411514,
27411597-27411652,27412293-27412333,27412570-27412675,
27413891-27414023,27414096-27414645
Length = 561
Score = 92.7 bits (220), Expect = 1e-19
Identities = 60/153 (39%), Positives = 88/153 (57%), Gaps = 14/153 (9%)
Query: 17 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGK 76
+G I ++L +D+ P T +NF LC K Y G +FH+V +F+ Q GD T G GG
Sbjct: 9 VGDIEVDLHTDMCPLTTKNFLKLC---KMKYYNGCLFHKVEKDFLAQTGDPTG-TGAGGD 64
Query: 77 SIY----GNK---FEDE-NFTLKHTGPGILSMANAGADTNGSQFFIT-TVKTSWLDGRHV 127
S+Y G++ F+DE L+H+ G ++MA+AG + N SQF+IT +LD +H
Sbjct: 65 SVYKFLYGDQARFFDDEIRPDLRHSKKGTIAMASAGENCNASQFYITLRDDVDYLDDKHT 124
Query: 128 VFGNVVEGMEVVKQI-ETFGSQSGKTSKRIVIK 159
VFG V EG + + +I ET+ G+ K I IK
Sbjct: 125 VFGMVAEGFDTLTKISETYVDDKGRPFKDIRIK 157
>07_03_0359 -
17201711-17201803,17202185-17202332,17202437-17202574,
17204331-17204416,17205233-17205283,17205774-17205858,
17205930-17206081
Length = 250
Score = 70.5 bits (165), Expect = 6e-13
Identities = 48/133 (36%), Positives = 67/133 (50%), Gaps = 7/133 (5%)
Query: 12 VDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHN 71
V D G I IE+ D + + F +LC K +KG F VI NF++QGGDF + N
Sbjct: 97 VIDTAKGSITIEIYKDASADVVDRFVSLC---KSNHFKGMPFRHVIKNFVIQGGDF-DFN 152
Query: 72 GTGGKSIYGNKFEDEN-FTLKHTGPGILSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 130
G + I K EN + KH I + N + G FITT L+ + VVFG
Sbjct: 153 GAAQEWILKAKASGENALSPKHEAFMIGTTKNP--NNKGFDLFITTAPIPDLNDKLVVFG 210
Query: 131 NVVEGMEVVKQIE 143
V+ G ++V++IE
Sbjct: 211 QVINGQDIVQEIE 223
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 66.5 bits (155), Expect = 1e-11
Identities = 32/68 (47%), Positives = 41/68 (60%), Gaps = 8/68 (11%)
Query: 4 PRVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFG--------YKGSIFHR 55
P VFFD+ + +I EL +DV PKT ENFRALCTGE+G G +KG+ HR
Sbjct: 8 PHVFFDIAIGGRAAERITFELFADVVPKTTENFRALCTGERGLGVSTQKPLYFKGTNMHR 67
Query: 56 VIPNFMLQ 63
++ FM Q
Sbjct: 68 ILKGFMAQ 75
Score = 48.8 bits (111), Expect = 2e-06
Identities = 22/49 (44%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 117 VKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQIA 165
V TS + +HVVFG VV GM ++K++E GS +GK + + I DCG+++
Sbjct: 87 VSTSCVS-KHVVFGKVVTGMPLLKKLEAVGSDTGKPTCEVKIVDCGEVS 134
>02_01_0086 + 613113-613532
Length = 139
Score = 65.3 bits (152), Expect = 2e-11
Identities = 42/122 (34%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 22 IELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKSIYGN 81
+EL +D+ P T ENFRAL T +K YKG + P ++G +
Sbjct: 1 MELYADLVPLTAENFRALYT-KKPLHYKGLCLSQHYPRIHVEGRRLRQGPWHRRRVHLRR 59
Query: 82 KFEDENFTLKHTGPGILSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQ 141
+ENF L H P + N A+ N SQFF + W DG +VVFG ++ G +K
Sbjct: 60 HLPNENFLLPHDRPWL---PNGSAENNISQFF---TRVPWFDGNYVVFGCIISGFHNLKA 113
Query: 142 IE 143
IE
Sbjct: 114 IE 115
>06_03_1075 +
27399279-27399376,27399449-27399555,27400791-27400898,
27401763-27401860,27401983-27402033,27402137-27402228,
27402360-27402459,27402765-27402884,27402977-27403045,
27403299-27403345,27403428-27403483,27404760-27404800,
27405155-27405260,27406728-27406860,27406937-27407357
Length = 548
Score = 57.2 bits (132), Expect = 6e-09
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 83 FEDE-NFTLKHTGPGILSMANAGADTNGSQFFITTVK-TSWLDGRHVVFGNVVEGMEVVK 140
F+DE + L+H+ G ++MA+AG + N SQF+IT +LD +H VFG V EG + +
Sbjct: 108 FDDEIHPELRHSKMGTIAMASAGENCNASQFYITLRDGVDYLDDKHTVFGMVAEGFDTIT 167
Query: 141 QI-ETFGSQSGKTSKRIVIK 159
+I ET+ G+ K I I+
Sbjct: 168 KINETYVDDKGRPFKDIRIR 187
Score = 33.1 bits (72), Expect = 0.11
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 17 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHR 55
+G I ++L +D+ P T +NF LC G +G G F +
Sbjct: 9 VGDIEVDLHTDMCPLTTKNFLKLCKGNEGLVAGGLAFRK 47
>08_02_0053 + 11721658-11721689,11721960-11722710
Length = 260
Score = 50.0 bits (114), Expect = 9e-07
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 21/141 (14%)
Query: 13 DDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNG 72
D PLG+++ L + P T NF+A CT Y+G++ H+++ G
Sbjct: 123 DSEPLGRVIFGLYGRLLPLTTANFKAACTSA---AYRGTLVHKLLQGQFFVAGRQGPRRD 179
Query: 73 TG------GKSIYGNKFEDENFTLKHTGPGILSMANAGADTNGS----------QFFITT 116
G G + + F LKH PG LS+ D + +F +TT
Sbjct: 180 RGEVQPPTGLVRNAETIDPKAFELKHARPGTLSLCLGQNDDDDDIKLNPNYHNVEFLVTT 239
Query: 117 --VKTSWLDGRHVVFGNVVEG 135
LDG+++VFG V+EG
Sbjct: 240 GPGPCPELDGQNIVFGTVLEG 260
>01_01_0077 - 585670-585787,585921-586687
Length = 294
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 5 RVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQG 64
+ F DV++ P G+I I L D P F +L T G GY+ F +++P ++ G
Sbjct: 76 KAFLDVSIGGEPAGRITIGLFGDAAPAGASRFLSLVT---GVGYRRKEFVKIVPGYVQHG 132
Query: 65 G 65
G
Sbjct: 133 G 133
>11_06_0322 +
22358505-22358642,22358690-22358791,22359444-22359557,
22359643-22359791,22360155-22360227,22360308-22360397,
22360752-22360791,22361579-22361661,22362614-22362775
Length = 316
Score = 37.1 bits (82), Expect = 0.007
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 89 TLKHTGPGILSMA-NAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE 143
T+KH GILSM ++ ++ GS F I LDG++ VFG + +G + ++++E
Sbjct: 156 TVKHVR-GILSMGRHSDPNSGGSSFSILLGDAPHLDGQYAVFGRLTKGDDTLRKLE 210
>10_01_0310 + 3425099-3425218
Length = 39
Score = 36.7 bits (81), Expect = 0.009
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 18 GKIVIELRSDVTPKTCENFRALCTG 42
G +VIE +D PKT ENFR +CTG
Sbjct: 8 GSVVIEQFADKVPKTTENFRPMCTG 32
>04_04_1323 + 32644956-32645096,32645488-32646126,32646701-32646907,
32647020-32647100,32647686-32648566,32648641-32648932,
32649657-32650673,32651334-32651605,32651992-32652493
Length = 1343
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 84 EDENFTLKHTGPGILSMANAGADTNGSQFFITTVK 118
ED + LKHT G++ A+ G F + T++
Sbjct: 1051 EDHSIKLKHTEKGMVQRVLLSANDEGKNFAVVTLR 1085
>01_06_0862 - 32532905-32533076,32534289-32534848
Length = 243
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 30 PKTCENFRALCTGEKGFGYKGSIFHRVIPN 59
PKT E+ A G+ G GY+G IF + N
Sbjct: 163 PKTAESGTAGLAGKGGDGYQGRIFQELDEN 192
>07_03_0831 -
21810002-21810319,21810423-21810573,21810660-21810897,
21811011-21811221,21811336-21811559,21811696-21811806,
21813265-21813636,21813810-21814782
Length = 865
Score = 27.1 bits (57), Expect = 7.5
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 75 GKSIYGNKFEDENFTLKHTGPGILSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVE 134
G G E E+F T + M A TNG + T+ TSW G+
Sbjct: 143 GSDAAGTDVEWESFH-HPTDTFVPGMEIALRQTNGDR----TLYTSWRSDADPATGDFTL 197
Query: 135 GMEVVKQIETFGSQSGKTS 153
G++ Q+ + SQ GK S
Sbjct: 198 GLDASAQLYIWRSQGGKNS 216
>04_04_1613 -
34779640-34779747,34780086-34780151,34781155-34781214,
34781690-34781795,34781965-34782110,34782934-34783016,
34783157-34783194,34783441-34783472,34783732-34783828,
34783951-34784234,34784752-34784904
Length = 390
Score = 27.1 bits (57), Expect = 7.5
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 31 KTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDE 86
K C NF A C F V+PN +L+ +F N G++I+ ED+
Sbjct: 178 KICINFSAHCIPPSAFSVCSLYVFAVLPN-LLENPEFQNRRNP-GRTIFMLDDEDD 231
>05_04_0173 +
18724367-18724476,18724570-18724651,18724750-18724840,
18725060-18725172,18725270-18725342,18725445-18725565,
18725665-18725782,18726609-18726748,18726824-18726881,
18727007-18727077,18727181-18727733
Length = 509
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 63 QGGDFTNHNGTGGKSIYGN 81
QGG + N G GG YGN
Sbjct: 418 QGGGYPNRGGQGGGGSYGN 436
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.139 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,367,119
Number of Sequences: 37544
Number of extensions: 248337
Number of successful extensions: 393
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 320
Number of HSP's gapped (non-prelim): 38
length of query: 165
length of database: 14,793,348
effective HSP length: 77
effective length of query: 88
effective length of database: 11,902,460
effective search space: 1047416480
effective search space used: 1047416480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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