GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002428-TA|BGIBMGA002428-PA|undefined
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    31   0.55 
SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    29   2.2  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    28   6.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   8.9  

>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 15/57 (26%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 639 KLLSETLMWQIASQVQELKKLVVQNKEVLQMLRTNFDKPEIMREQFK-RLQNVDNVL 694
           KL SE ++ Q   + +E+ + ++++K +   +RT +D+  +   + K R  NVD+++
Sbjct: 169 KLESEAIIKQNEERNEEMFQSLIEDKRLCSQVRTEYDRIRMEASELKIRYHNVDSLM 225


>SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 182

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 200 NDNPPQKVKGKSAEDLVDRQLPELLFHMEELRALVRKYSQV 240
           N NP   V+G   +D+V R L   LF M  +  + + Y+Q+
Sbjct: 5   NRNPKSLVRGYCKKDIVLRNLDGWLFDMITISTIFKLYNQI 45


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 871 YLLLDLIVQESPFLTMDLLESCFPYV--LIRNAYHEVYKQEQMLL 913
           Y L+DL++  SP+L  D   + F YV   +R+    + K+   LL
Sbjct: 673 YSLIDLLIVISPYLNQDYAVTLFEYVHEFLRHVNPAIQKKGYKLL 717


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/56 (23%), Positives = 28/56 (50%)

Query: 723 PFLISSIKDFQQQLPSGDPMRVISEMCSAAGLPCKVDPTLASALRQQKSEVEEEEH 778
           PF++S+  +  +   S  P + ++++  A      +DP      + + SE EE+E+
Sbjct: 313 PFVVSNTANSDEPASSSKPAKPLTDLNRAFSQRLNLDPQKPGKSQGEISEQEEDEY 368


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.136    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,909,560
Number of Sequences: 5004
Number of extensions: 159324
Number of successful extensions: 413
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 410
Number of HSP's gapped (non-prelim): 5
length of query: 915
length of database: 2,362,478
effective HSP length: 79
effective length of query: 836
effective length of database: 1,967,162
effective search space: 1644547432
effective search space used: 1644547432
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)