Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002428-TA|BGIBMGA002428-PA|undefined
(915 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1458 - 27270834-27271320,27271752-27271961,27272627-272736... 116 1e-25
06_01_0426 + 3050332-3050526,3050864-3051116,3051923-3051980,305... 31 5.5
10_08_0071 - 14652607-14653716 30 9.6
10_06_0124 + 11013346-11013474,11013879-11013939,11014751-110148... 30 9.6
04_04_0838 - 28550036-28550237,28550595-28550676,28550972-285510... 30 9.6
>08_02_1458 - 27270834-27271320,27271752-27271961,27272627-27273624,
27274099-27274195,27274278-27274393,27274465-27274590,
27275123-27275233,27275347-27275428,27275844-27275989,
27276457-27276650,27277277-27277388,27277869-27278001,
27278295-27278437,27278488-27278562,27278830-27278937,
27279072-27279197,27279752-27279836,27280358-27280440,
27280545-27280625,27280709-27280789,27281960-27282034,
27282112-27282498,27282902-27283036
Length = 1396
Score = 116 bits (278), Expect = 1e-25
Identities = 112/535 (20%), Positives = 231/535 (43%), Gaps = 38/535 (7%)
Query: 314 TKMVDNLDEIMVETSDLSIFCFYNKIFENQFHMCLEFP-AQNRYIIAFPLICSHFQNCTH 372
++ VD L+ + + L FY++ F + P + ++ A+ F C
Sbjct: 654 SRCVDELEGQLSKHGSLKKLYFYHQHLTTVFRNTMFGPEGRPQHCCAWLGAACCFPECAS 713
Query: 373 ELCPEERHHILERSLSVVNIFLDEMAKEAKNIITTICDEQC--TMSDKLLPKHCAQTIAH 430
+ PEE + I S+S V ++ + + +I + E ++ +L P+ A + +
Sbjct: 714 SIIPEEVNKIGRDSISYVESLIESIMGGLEGLINILDSEGGFGSLEMQLSPEQAAIRLNN 773
Query: 431 LAXXXXXXXXXXXTIEIVKPGAESYRKTREELTTMDKLHMALTELCYAINYCSTVNVWEY 490
++ PG ESY + ++ LT LC +N + V +
Sbjct: 774 ATRAKAVSG-------LLAPGHESYPDNSSSVKMLEAAMQRLTSLCSVLNDMEPICVLNH 826
Query: 491 TFAPREYLHQHLETRFSKALVGMVMFNQDTSEIAKPSELLVSVRAYMNVLQTVENYVHID 550
F REY+ + F + M+ + S + +PS + +R +++++ E ++ +D
Sbjct: 827 VFILREYMRDCIIGNFRRRFHSMI---RTDSCLQRPSVIESLLRRHLSIIHLAEQHISMD 883
Query: 551 ITRVFNNCLLQQT-----QNM-------DSHKEKTIASLYTQWYSEILLRRVSAGSICFS 598
+T LL ++ N+ ++H + + + WY + ++ S + F
Sbjct: 884 LTEGIREVLLAESFTGPFPNLQVFETPTETHGGGSAIDIISNWYIDNFVKDASRTGVVFD 943
Query: 599 MSQKAFVSLTAEGAIPFNAEEYSDINELRALAELIGPYGMKLLSETLMWQIASQVQELKK 658
SQ F S G + AE ++D EL+AL L G YG+ L + L ++ + +
Sbjct: 944 ASQNCFRSSQPIGG-GYLAEAFTDKRELKALVRLFGGYGVDRLDKLLREHTSALLNCIDS 1002
Query: 659 LVVQNKEVLQMLRTNFDKPE-IMRE-QFKRLQNVDNVLQRMTIIGVILSFRQIAQESLLD 716
+ N++ L+ L + + + I R+ K++ +++ + G ++FR++ E++
Sbjct: 1003 ALRSNRDALEGLAGSVNSGDRIERDANLKQIIDIETLADFCIQAGQAITFRRLLVEAVGA 1062
Query: 717 VLERRIPFLISSIKDFQQQLPSGDPMR----VISEMCSAAGLPCKVDPT-LASALRQQKS 771
VLE ++P + S +K QLP P + + + S+ G+ K D + S L + S
Sbjct: 1063 VLEEKVPLIYSLLKGLAMQLPEEVPDKNEIIRLRRVASSVGVGDKHDAEWVHSILAEIGS 1122
Query: 772 EVEEEEHLIVCLLMVFVAVSLPRLARSEVSFYRPSLEGHANNIHCIAPAINHIFG 826
+ L+ L F+A ++ + Y + G +NN+HC+A ++ + G
Sbjct: 1123 ANDNSWTLLPYLCAAFMASNM-----WSTTAYDVNTGGFSNNLHCLARCVSAVVG 1172
Score = 35.5 bits (78), Expect = 0.19
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 872 LLLDLIVQESPFLTMDLLESCFPYVLIRNAYHEVY 906
+ LD + + SP+L LE PY ++R+ YH++Y
Sbjct: 1243 IFLDQLCEMSPYLPRSTLEVHIPYTILRSIYHQLY 1277
Score = 32.3 bits (70), Expect = 1.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 137 DCYHHAVQKAGYKHRERRKFLRTALKELGLILTDQPGLLGP 177
+ + A+ A H ERR L+ + + L TDQP LL P
Sbjct: 461 EVHEQALVSADALHHERRILLKQEIGRMVLFFTDQPSLLAP 501
>06_01_0426 +
3050332-3050526,3050864-3051116,3051923-3051980,
3052054-3052105,3052601-3052678,3053012-3053188,
3053594-3053806
Length = 341
Score = 30.7 bits (66), Expect = 5.5
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 600 SQKAFVSLTAEGAIPFNAEEYSDINE-LRALAEL-IGPYGMKLLSETLMWQIASQVQELK 657
S +F+ A+ E D N+ LR EL G G KL+SE L+W+ AS ++ L
Sbjct: 48 SDISFLIKRAKALSGLGQECVRDCNDALRRGEELGSGSSGNKLISEALLWK-ASALEHLA 106
Query: 658 KLVVQNKEVLQMLRTNFD 675
++V+ +LR + +
Sbjct: 107 DCAADYEQVILLLRRSLE 124
>10_08_0071 - 14652607-14653716
Length = 369
Score = 29.9 bits (64), Expect = 9.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 36 IKKACGDAKSKPAFLSDKALESSIKHIVRRFPNI 69
+KKAC D PA LS S +H+ R FP++
Sbjct: 320 LKKACFDFLRSPANLSAVTGSESFEHLSRSFPSL 353
>10_06_0124 +
11013346-11013474,11013879-11013939,11014751-11014838,
11017619-11017806,11017849-11018112,11018188-11018262,
11018263-11019698
Length = 746
Score = 29.9 bits (64), Expect = 9.6
Identities = 25/111 (22%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 594 SICFSMSQKAFVSLTAEGAIPFNAEE-YSDINEL-RALAELIGPYGMKLLSETLMWQIAS 651
S+ FS + + ++ G + + Y ++ ++ + A L+ + L S T+ + +
Sbjct: 576 SVDFSECSEDILQISPRGDCNLRSLKLYGELQKIPKFFASLLALRELYLSSTTIRGDVLT 635
Query: 652 QVQELKKLVVQNKEVLQMLRTNFDKPEIMREQFKRLQNVDNVLQRMTIIGV 702
+ EL+ LV L+++ N + I F+ LQ + V+QR+T+ G+
Sbjct: 636 ALSELRYLVY-----LKLIAENLEDFMIKYGAFQSLQRLCFVIQRLTLPGI 681
>04_04_0838 -
28550036-28550237,28550595-28550676,28550972-28551011,
28551342-28551416,28551448-28551543,28551710-28551805,
28551897-28551974,28552064-28552170,28552450-28552477,
28552777-28552898,28554106-28554172,28554336-28554508,
28554763-28554846,28555616-28555733,28556093-28556164,
28557026-28557118,28557484-28557636,28558000-28558086,
28559436-28559528,28560416-28560643,28561106-28561207,
28561390-28561596,28561798-28561846,28562385-28562537,
28562649-28562712,28562905-28563175,28564008-28564072,
28564184-28564337
Length = 1052
Score = 29.9 bits (64), Expect = 9.6
Identities = 21/113 (18%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
Query: 149 KHRERRKFLRTALKELGLILTDQPGLLGPKALLIFIGLCYARDEVFWLLRHNDNPPQKVK 208
K + L L +L L+D + A + + + ++ + + P+ +K
Sbjct: 146 KQVNKMDILSLGLPKLSTELSDDD--IRETAYEVLLASLFVSGKILFSEEKKEKKPKFLK 203
Query: 209 GKSAEDLVDRQLPELLFHMEELRALVRKYSQVMQRYYVQYLSGFDAVALNMMI 261
G ++ V P+ H +L L+R + Q + Y S D V+++ ++
Sbjct: 204 GLRSKTEVSNPSPQPENHYSQLLDLIRVQMEARQMFSKNYFSSQDRVSMDWVV 256
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.136 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,213,522
Number of Sequences: 37544
Number of extensions: 894976
Number of successful extensions: 1972
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1961
Number of HSP's gapped (non-prelim): 9
length of query: 915
length of database: 14,793,348
effective HSP length: 89
effective length of query: 826
effective length of database: 11,451,932
effective search space: 9459295832
effective search space used: 9459295832
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 64 (29.9 bits)
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