Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002427-TA|BGIBMGA002427-PA|IPR006935|Type III
restriction enzyme, res subunit, IPR001650|Helicase, C-terminal,
IPR014001|DEAD-like helicases, N-terminal, IPR014021|Helicase
superfamily 1 and 2 ATP-binding
(1553 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 353 8e-98
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 306 1e-83
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 55 7e-08
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 46 3e-05
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 45 7e-05
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 45 7e-05
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 43 3e-04
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 41 0.002
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 40 0.004
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 38 0.011
SPAC664.08c |||traub transciption factor family protein |Schizos... 37 0.026
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 37 0.026
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 36 0.034
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 35 0.078
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 35 0.10
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 34 0.14
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 34 0.18
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 34 0.18
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 34 0.18
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 33 0.24
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 33 0.24
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar... 32 0.55
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 32 0.55
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 32 0.55
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 32 0.55
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 32 0.73
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 31 0.96
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 31 0.96
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 31 1.3
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 31 1.3
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 31 1.7
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 31 1.7
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 30 2.2
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 30 2.2
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 30 2.2
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 30 2.2
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 30 2.2
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 30 2.9
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa... 30 2.9
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 30 2.9
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 30 2.9
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 29 3.9
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 29 5.1
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 29 5.1
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 29 5.1
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 29 5.1
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 29 6.8
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 29 6.8
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 29 6.8
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 29 6.8
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 29 6.8
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 29 6.8
SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 29 6.8
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 29 6.8
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar... 28 8.9
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 28 8.9
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 28 8.9
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch... 28 8.9
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch... 28 8.9
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 353 bits (869), Expect = 8e-98
Identities = 194/492 (39%), Positives = 284/492 (57%), Gaps = 21/492 (4%)
Query: 70 DKLLGQTWIYPTNYPVRDYQFNIINAALVKNTLVSLPTGLGKTFIAAVVMYNFYRWYPLG 129
D+ Q W+YP N RDYQFNI+ AL +N LV+LPTGLGKTFIAAVVM N+ RW+P
Sbjct: 58 DESAAQQWVYPINVSFRDYQFNIVQKALFENVLVALPTGLGKTFIAAVVMMNYLRWFPKS 117
Query: 130 KIVFTAPTRPLVAQQIDACYNIVAIPPRDTIEMTGHMQTSTRKLHWQNKRVFFATPQVIY 189
IVF APT+PLV QQ++ACY I IP T E++GH+ +TR ++Q++ VFF TPQ I
Sbjct: 118 YIVFMAPTKPLVTQQMEACYKITGIPKSQTAELSGHVPVTTRNQYYQSRNVFFVTPQTIL 177
Query: 190 NDIKSGICPGDKIRCLVIDEAHRARKNYAYCQIINALDDMGHKTYRILALSATPGXXXXX 249
NDIK GIC +I CLVIDEAHR+ NYAY ++++ L + +K +RILALSATPG
Sbjct: 178 NDIKHGICDRTRISCLVIDEAHRSTGNYAYVEVVHLL-SLSNKNFRILALSATPGNKLEA 236
Query: 250 XXXXXXXLHIANLELRSEECIDVARYSHSRKINTVIIPLGTELTHLKQRYVEILDCYARR 309
LHI+ +E+R+E ID+++Y ++++ + L E+T ++ R+ IL+ ++
Sbjct: 237 IQNVIDSLHISRIEIRTENSIDISQYVQKKEVDFFPVDLSAEITDIRDRFSSILEPMLQK 296
Query: 310 LKQLNILP-QNLGNLSKGRIVMMYKDFQTKDRSNRHPQHNY-IMKDFMMLIALFHGLELL 367
L + N QN +++ +V + F N + I+ F L + L LL
Sbjct: 297 LNKGNYYRIQNAKDITSFTVVQAKQAFLAMSGQNFPANQKWDILNTFDALATFAYPLNLL 356
Query: 368 TKHGSRVFLNFFDEHPEKSWIQSDDKLTGLLEQLRDDLGINPMSLNTSILPDGTIPEIPK 427
HG R F E E+ ++ +G +++ + P+ + IL +
Sbjct: 357 LNHGIRPFYQKLREVEEECFVGR----SGYKKRIINHENYRPLMDDIEIL--------LR 404
Query: 428 NLSF-GHPKFYKLKEIMMEHFTKAQQNGQDTRAIVFCEYRESVNLVHCLLLQCRPLITPQ 486
+ SF GHPK L+ I+ E+F K Q +DTR ++F E R S + L + P + P
Sbjct: 405 DQSFVGHPKLEHLERIVTEYFEKEQT--KDTRIMIFVEIRSSAEEILRFLGKFYPNVRPA 462
Query: 487 TFVGQGASGKDGRTVVSQPQQLRVMRAFRAGACNTLVATCVAEEGLDVGSVDLILCFDIS 546
F+GQ A K +SQ Q ++ F+ G NTL+AT + EEGLD+G VD+I+C+D S
Sbjct: 463 IFIGQSAVRK--AAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDAS 520
Query: 547 TRSPVRLVQRDG 558
SP+R++QR G
Sbjct: 521 A-SPIRMLQRMG 531
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 306 bits (752), Expect = 1e-83
Identities = 171/486 (35%), Positives = 259/486 (53%), Gaps = 18/486 (3%)
Query: 75 QTWIYPTNYPVRDYQFNIINAALVKNTLVSLPTGLGKTFIAAVVMYNFYRWYPLGKIVFT 134
Q WI+P R+YQ AL N L++LPTGLGKTFIAAVVM N++RW+P KI+F
Sbjct: 101 QNWIFPQTQQYRNYQKEFCEQALFHNLLLALPTGLGKTFIAAVVMLNYFRWFPESKIIFL 160
Query: 135 APTRPLVAQQIDACYNIVAIPPRDTIEMTGHMQTSTRKLHWQNKRVFFATPQVIYNDIKS 194
APT+PL+ QQ AC N+ + P T E+ G + R + KRVFF TPQ + ND+K
Sbjct: 161 APTKPLLLQQRVACSNVAGMSPGATAELNGEVSPDRRLFEYNTKRVFFMTPQTLQNDLKE 220
Query: 195 GICPGDKIRCLVIDEAHRARKNYAYCQIINALDDMGHKTYRILALSATPGXXXXXXXXXX 254
+ I CL+ DEAHRA N++Y Q++ A+ + +R+L L+ATPG
Sbjct: 221 HLLDAKSIICLIFDEAHRATGNHSYAQVMRAV-LRSNSHFRVLGLTATPGSSTASVQKVV 279
Query: 255 XXLHIANLELRSEECIDVARYSHSRKINTVIIPLGTELTHLKQRYVEILDCYARRLKQLN 314
LHI+ L +R+EE ID+ Y +KI + + + +E+ LK + + Y L+Q
Sbjct: 280 DCLHISKLIVRNEESIDIRSYVFHKKIQLIKVTISSEMNILKSDFANLYRPYFNFLRQKK 339
Query: 315 ILPQNLG--NLSKGRIVMMYKDFQTKDRSNRHPQHNYIMKDFMMLIALFHGLELLTKHGS 372
++P N N+ + + + + ++ + + + IM F +LI+ H LL HG
Sbjct: 340 LIPINCECLNIKAYTLFVSLRKYSFSSKNVQSKEKSKIMSCFTLLISCAHITYLLDCHG- 398
Query: 373 RVFLNFFDEHPEKSWIQSDDKLTGLLEQLRDDLGINPMSLNTSILPDGTIPEIPKNLSFG 432
+ F+ + E +++ K +G L P + L + + LS
Sbjct: 399 --IIQFYQKLVETK-NKAEGKGSGQSFWL---FTSKPFAFYLEHLHNKI-----QGLSLN 447
Query: 433 HPKFYKLKEIMMEHFTKAQQNGQDTRAIVFCEYRESVNLVHCLLLQCRPLITPQTFVGQG 492
HPK L E++ EHF + Q+ R ++F E+R + + LL RP++ F+GQ
Sbjct: 448 HPKMNHLLELLKEHFKDTSEGYQNQRVMIFTEFRNTAEYITTTLLAIRPMVRASLFIGQA 507
Query: 493 ASGKDGRTVVSQPQQLRVMRAFRAGACNTLVATCVAEEGLDVGSVDLILCFDISTRSPVR 552
S T ++Q QQ + FRAG NTLVAT + EEGLD+G D+I+C+D S+ SP+R
Sbjct: 508 NSAYS--TGMNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASS-SPIR 564
Query: 553 LVQRDG 558
+QR G
Sbjct: 565 TIQRMG 570
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 55.2 bits (127), Expect = 7e-08
Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 435 KFYKLKEIMMEHFTKAQQNGQDTRAIVFCEYRESVNLVHCLLLQCR-PLITPQTFVGQGA 493
K +KL E++ + K+ R ++F E + + + + P I +F+G G
Sbjct: 344 KVFKLLELLKATYRKSDS----VRTVIFVERKATAFTLSLFMKTLNLPNIRAHSFIGHGP 399
Query: 494 SGKDGRTVVSQPQQLRVMRAFRAGACNTLVATCVAEEGLDVGSVDLILCFDISTRSPVRL 553
S + G ++ +Q + F+ G N L+AT VAEEG+DV S +L++ F+I R+ +
Sbjct: 400 SDQ-GEFSMTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNI-CRTVTQY 457
Query: 554 VQRDG 558
VQ G
Sbjct: 458 VQSRG 462
Score = 38.7 bits (86), Expect = 0.006
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 17/166 (10%)
Query: 85 VRDYQFNIINAALVKNTLVSLPTGLGKTFIAAVVMYNFYRWYPL--------GKI-VFTA 135
+R YQ ++ N A +NTL+ + TG GKT +A ++ L KI VF
Sbjct: 12 LRKYQQDVYNIASKQNTLLVMRTGAGKTLLAVKLIKQKLEEQILIQESNLEHKKISVFLV 71
Query: 136 PTRPLVAQQIDACYNIVAIPPRDTI---EMTGHMQTSTRKLHWQNKRVFFATPQVIYNDI 192
PLV QQ + Y +P + + E++ M V T + Y +
Sbjct: 72 NKVPLVFQQAE--YIRSQLPAKVGMFYGELSIEMSEQLLTNIILKYNVIVITADLFYLFL 129
Query: 193 KSGICPGDKIRCLVIDEAHRARKNYAYCQIINALDDMGHKTYRILA 238
G + + ++ DE H A N AY +I+N D H+ +L+
Sbjct: 130 ARGFLSINDLNLIIFDECHHAIGNDAYARIMN---DFYHRAKAVLS 172
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 46.4 bits (105), Expect = 3e-05
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 502 VSQPQQLRVMRAFRAGACNTLVATCVAEEGLDVGSVDLILCFDISTRSPVRLVQRDGLNA 561
+SQ +L + F++GA +TLVAT VA GLD+ VD+++ +DI T S + R G A
Sbjct: 319 LSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKA-YIHRVGRTA 377
Query: 562 K 562
+
Sbjct: 378 R 378
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 45.2 bits (102), Expect = 7e-05
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 7/116 (6%)
Query: 100 NTLVSLPTGLGKTFIAAVVMYNFYRWYPLGKIVFTAPTRPLVAQQI-DACYNIVAIPPRD 158
N V PTG GKT A + + YP K+V+ AP + LV +++ D + +V
Sbjct: 1152 NIFVGAPTGSGKTMAAELATWRALHNYPKSKVVYIAPMKALVKERVKDWGHRLVEPMGIS 1211
Query: 159 TIEMTGHMQTSTRKLHWQNKRVFFATPQV---IYNDIKSGICPGDKIRCLVIDEAH 211
IE+TG + + N + TP+ I KS D + +++DE H
Sbjct: 1212 MIELTGDTNPDVKAV--TNANIIITTPEKWDGITRSWKSRKYVQD-VSLIILDEIH 1264
Score = 38.7 bits (86), Expect = 0.006
Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 29/204 (14%)
Query: 65 ELNGYDKLLGQTWI-YPTNYPVRDYQFNIINAALVKNTLVSLPTGLGKTFIAAVVMYNFY 123
E++ D L +T++ Y T ++ + I +N L+ PTG GKT +A + M
Sbjct: 260 EISSMDILCRKTFLSYQTLNRIQSLVYPIAYKTN-ENMLICAPTGAGKTDVALLAMLQTI 318
Query: 124 RWY-----------PLG------KIVFTAPTRPLVAQQIDACYNIVAIPPRDTIEMTGHM 166
Y PL KIV+ AP + L A+ ++ +A T E+TG M
Sbjct: 319 SNYVESMNLMDESEPLDVHRDDFKIVYIAPMKALAAEVVEKMGKRLAWLGLKTRELTGDM 378
Query: 167 QTSTRKLHWQNKRVFFATPQ---VIYNDIKSGICPGDKIRCLVIDEAHRAR-KNYAYCQI 222
Q + K ++ TP+ V+ +K+R ++IDE H + A +
Sbjct: 379 QLT--KTEIAETQILVTTPEKWDVVTRKSVGDTQLAEKVRLVIIDEVHMLHDERGAVIES 436
Query: 223 INA----LDDMGHKTYRILALSAT 242
+ A L + + RI+ LSAT
Sbjct: 437 LVARTQRLVETSQQMIRIVGLSAT 460
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 45.2 bits (102), Expect = 7e-05
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 504 QPQQLRVMRAFRAGACNTLVATCVAEEGLDVGSVDLILCFDISTRSPVRLVQRDGLNAKL 563
Q +++ + FRA A LVAT VA GLD+ SV L++ FD+ R P + R G A+
Sbjct: 294 QRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDL-PRDPDDYIHRVGRTARA 352
Query: 564 LQSNE 568
+S E
Sbjct: 353 GRSGE 357
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 43.2 bits (97), Expect = 3e-04
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 502 VSQPQQLRVMRAFRAGACNTLVATCVAEEGLDVGSVDLILCFDISTRSPVRLVQRDGLNA 561
+SQ Q++R + FR G CN L+AT VA G+D+ +++++ ++ V L R G A
Sbjct: 538 LSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYL-HRVGRTA 596
Query: 562 K 562
+
Sbjct: 597 R 597
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 40.7 bits (91), Expect = 0.002
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
Query: 883 DVNKTDLAEKNVSANFDLDLEFDSQIFSEKSNDNEFEKDEVNRENNFDIGELHDIFANSS 942
D K +A S+ FD D + S+ D E ++ + + ++G D+ S
Sbjct: 1296 DSEKRRIALGLKSSYFDSDSDIS---MSDNEEDVEMRSEDQSDTSESEVGSKDDV--QSE 1350
Query: 943 PLDNFEAEKTDKPQENEKKVLSFFGLD-----SVEDIFAD-YEDSFDKKCDEPEMKDIEA 996
++N E+ D+ +E E L G D +V D AD EDS D++ +EP+ K ++
Sbjct: 1351 EVENLESAG-DEDEEEEPSALQANGFDWTDGSTVFDKLADDTEDSEDEEDEEPKRKKSKS 1409
Query: 997 DKTDD 1001
D+ DD
Sbjct: 1410 DRFDD 1414
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 39.5 bits (88), Expect = 0.004
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 502 VSQPQQLRVMRAFRAGACNTLVATCVAEEGLDVGSVDLIL--CFDISTRSPVRLVQRDG 558
+SQ +L+ + F++G C LVAT VA GLD+ V L++ F ++ V + R G
Sbjct: 450 MSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTG 508
Score = 29.5 bits (63), Expect = 3.9
Identities = 19/83 (22%), Positives = 36/83 (43%)
Query: 130 KIVFTAPTRPLVAQQIDACYNIVAIPPRDTIEMTGHMQTSTRKLHWQNKRVFFATPQVIY 189
+++ +PTR L Q + +++ + + G S + +N V TP +
Sbjct: 238 RVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAKNASVIIGTPGRLL 297
Query: 190 NDIKSGICPGDKIRCLVIDEAHR 212
+ I G ++ LV+DEA R
Sbjct: 298 DLINDGSIDCSQVGYLVLDEADR 320
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 37.9 bits (84), Expect = 0.011
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 503 SQPQQLRVMRAFRAGACNTLVATCVAEEGLDVGSVDLILCFDIST 547
+Q ++ R + FR+G + +VAT VA GLD+ +V ++ +D+ T
Sbjct: 465 TQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPT 509
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 36.7 bits (81), Expect = 0.026
Identities = 35/164 (21%), Positives = 72/164 (43%), Gaps = 9/164 (5%)
Query: 901 DLEFDSQIFSEKSNDNEFEKDEVNRENNFDIGELHDIFANSSPLD-NFEAEKTDKPQENE 959
D E FS++ + +E E D + RE+ D+ E + LD F+ KT +
Sbjct: 22 DPEALEDAFSDREDSSEEENDTLGREHYVDVSESKLRSKQAPQLDPKFKGRKTSR----- 76
Query: 960 KKVLSFFGLDSVEDIFADYEDSFDKKCD--EPEMKDIEADKTDDVTFLNVRSTTETHKPM 1017
+++L+ L+S ++ EDS + + D + ++ + + ++ N + P
Sbjct: 77 QELLNSGSLNSQSSSPSEEEDSEEDENDAVSEDHENFSSSEASSISEENEDDDQSSAIPE 136
Query: 1018 PDENPLSPSILSGRVKVKEQVTSPILCSQKRKFELSTKKEIHRN 1061
D + L I++G K+ +Q+ + L K+ L + + N
Sbjct: 137 KDMDRLK-KIINGEKKLSDQIRTSALEDMKKGLALKEQMRFYDN 179
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 36.7 bits (81), Expect = 0.026
Identities = 53/208 (25%), Positives = 82/208 (39%), Gaps = 22/208 (10%)
Query: 837 SDKKQTSGLLINLNEINLPDVDLIDY--------ISSKSISEYRNRAVE-DRASPDVN-K 886
SD K+T G L++ E + + DY KS S+ R R VE D + + N
Sbjct: 258 SDNKKTFGTLVSFVEPTITGSEQSDYRQIKIKKSKKKKSKSDRRKRLVELDAENENENDP 317
Query: 887 TDLAEKNVSANFDLDLEFDSQIFSE-KSNDNEFEKDEVNRENNFDIGELHDIFANSSPLD 945
+D N +N DL +E DS IF E K + E+ ++ D +L A L
Sbjct: 318 SDFVLPNGQSNSDLSVEQDSAIFKEQKKMKIQKRMRELETQSFADDDDLQQSIAMQRRLA 377
Query: 946 NFEAEKTDKPQ------ENEKKVLSFFGLDSVEDIFADYEDSFDKKCDEPEMKD----IE 995
A K KP+ +N ++V D+ + D +F E E ++ I
Sbjct: 378 QKRA-KILKPEDVAEQLQNAEEVTDMTDSDTASGLIFDDTRAFVNSIKETENREALGSIN 436
Query: 996 ADKTDDVTFLNVRSTTETHKPMPDENPL 1023
+D LN ++ P + N L
Sbjct: 437 EQAFEDSKDLNDTNSITGSSPTEESNAL 464
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 36.3 bits (80), Expect = 0.034
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 135 APTRPLVAQQIDACYNIVAIPPRDTI-EMTGHMQTSTR-KLHWQNKRVFFATPQVIYNDI 192
APTR L A QI + ++ P + +TG + + +L ++ V ATP +++ I
Sbjct: 199 APTREL-AHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVI 257
Query: 193 KSGICPGD--KIRCLVIDEAHRARKNYAYCQIINALDDMGH 231
G+ KI+CLV+DEA R + + ++ L+ +G+
Sbjct: 258 NENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGN 298
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 35.1 bits (77), Expect = 0.078
Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 6/168 (3%)
Query: 861 DYISSKSISEYRNRAVEDRASPDVNKTDLAEKNVSANFDLDLEFDSQIFSEKSNDNEFEK 920
D+ S S +Y A E D+N+T + S+ +D+ + S + + D E K
Sbjct: 71 DFDRSGSDQQYSAEA-EANQEDDLNETSQQAPDPSS-YDIRGQALSSATWDNAEDGENSK 128
Query: 921 DEVNRENNFDIGELHDIFANSSPLDNFEAEKTDKPQENEKKVLSFFGLDSVEDIFADYED 980
++ EN L A S DN E E + +E+ K + ++ +D DY +
Sbjct: 129 NDNYNENQ---SALTGSGAMESNEDNAE-ETSPFNREDGKMFIGGLNWETTDDSLRDYFE 184
Query: 981 SFDKKCDEPEMKDIEADKTDDVTFLNVRSTTETHKPMPDENPLSPSIL 1028
F + D M+D ++ FL ++ ++ M E+ L I+
Sbjct: 185 QFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKII 232
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 34.7 bits (76), Expect = 0.10
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 457 TRAIVFCEYRESVNLVHCLLLQCRPLITPQTFVGQGASGKDGRTVVSQPQQLRVMRAFRA 516
T+A++FC R V+ + +T + F G + Q Q+ +M FR
Sbjct: 259 TQAVIFCNTRRKVDWL-------TEQLTERDFTVSSMHGD-----MDQAQRDTLMHEFRT 306
Query: 517 GACNTLVATCVAEEGLDVGSVDLILCFDI 545
G+ L+ T + G+DV V L++ +D+
Sbjct: 307 GSSRILITTDLLARGIDVQQVSLVINYDL 335
Score = 29.1 bits (62), Expect = 5.1
Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 9/184 (4%)
Query: 64 EELNGYDKLLGQTWIYPTNYPVRDYQFNIINAALVKNTLVSLPTGLGKTFIAAV-VMYNF 122
+++N +LL + Y P Q I+ ++ L +G GKT ++ V+
Sbjct: 22 DDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKI 81
Query: 123 YRWYPLGKIVFTAPTRPLVAQQIDACYNIVAIPPRDTIE----MTGHMQTSTRKLHWQNK 178
+ + APTR L AQQI +VA+ +E + G +
Sbjct: 82 DTSLKQCQALILAPTREL-AQQIQKV--VVALGDLMNVECHACIGGTLVRDDMAALQAGV 138
Query: 179 RVFFATPQVIYNDIKSGICPGDKIRCLVIDEAHRARKNYAYCQIINALDDMGHKTYRILA 238
V TP +++ I+ P D ++ V+DEA QI + + + T +++
Sbjct: 139 HVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYD-IFQLLPPTAQVVL 197
Query: 239 LSAT 242
LSAT
Sbjct: 198 LSAT 201
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 34.3 bits (75), Expect = 0.14
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 16/110 (14%)
Query: 435 KFYKLKEIMMEHFTKAQQNGQDTRAIVFCEYRESVNLVHCLLLQCRPLITPQTFVGQGAS 494
KF +L E++ E + N D R +VF + +ES + + L++ T + G
Sbjct: 651 KFSRLLELLGELYN----NQLDVRTLVFVDRQESADALLSDLMKRG--YTSNSIHG---- 700
Query: 495 GKDGRTVVSQPQQLRVMRAFRAGACNTLVATCVAEEGLDVGSVDLILCFD 544
GKD Q + + ++AG + L+AT V GLDV S+ L++ +D
Sbjct: 701 GKD------QHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYD 744
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 33.9 bits (74), Expect = 0.18
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 567 NEIKESLYKRNPRMMPHDFTPKCQMLHITVA--KRNETKQNNEN-CKKGQKNIRSMLLSK 623
+++ E L+ + + H+F P + + I VA + E +Q + K G N +M
Sbjct: 566 HKLSEPLHDDSRQNSDHNFAPHSRPIAIRVATASQRELEQTEKRKAKNGAANASNMESRS 625
Query: 624 SKEPSNTTKKSKGKSELITNEQYGKLSPETIS 655
S+ ++ KK GK ++N ++ +T++
Sbjct: 626 SENETHRFKKFYGKERELSNNEFPSRQTKTVT 657
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 33.9 bits (74), Expect = 0.18
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 504 QPQQLRVMRAFRAGACNTLVATCVAEEGLDVGSVDLILCFD 544
Q + RV FR G C LV + + G+D+ +V++++ FD
Sbjct: 317 QSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD 357
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 33.9 bits (74), Expect = 0.18
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 506 QQLRVMRAFRAGACNTLVATCVAEEGLDVGSVDLILCFDI 545
Q+ +M +FR G LV T V G+DV V+L++ +D+
Sbjct: 390 QRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDM 429
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 33.5 bits (73), Expect = 0.24
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 99 KNTLVSLPTGLGKTFIAAVVMYNFYRWYPLGKIVFTAPTRPLVAQ 143
++ V PT GKTFI+ M R G +++ APT+ LV Q
Sbjct: 751 ESVFVVAPTSSGKTFISFYAMEKVLRDNDDGVVIYVAPTKALVNQ 795
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 33.5 bits (73), Expect = 0.24
Identities = 24/110 (21%), Positives = 57/110 (51%), Gaps = 8/110 (7%)
Query: 854 LPDVDLIDYISSKSISEYRNRAVEDRASPDVNKTDLAEKNVSANFDLDLEFDSQIFSEKS 913
L +V+ + + K + E N+ +E S ++ D+++ ++ +FD + +++S++ SE
Sbjct: 391 LEEVNRLKNLKRKELEEKLNQVIEIAGSKNI---DVSKLDLDEDFDPE-KWESKM-SEIF 445
Query: 914 NDNEFEKDEVNRE---NNFDIGELHDIFANSSPLDNFEAEKTDKPQENEK 960
N+N +E+D + ++ DI ++ + S L + E + + EK
Sbjct: 446 NENYYEEDSAKKPEFGDDIDIDDIAQVDNGSEDLGSIENKTVEDTGNREK 495
>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 32.3 bits (70), Expect = 0.55
Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 2/138 (1%)
Query: 624 SKEPSNTTKKSKGKSELITNEQYGKLSPET-ISENKYFAEHKEYWSMDRETY-LKDDSNV 681
SK+ + + + LI + YGK S + ++ A +E M+++ LKD+ +V
Sbjct: 46 SKQVAQKALEQLRDTGLIHGKLYGKQSVFVCLQDDLAAATPEELAEMEKQIQELKDEVSV 105
Query: 682 ETNLDMSKWLELQRTLQDTVNVEHSEDTVLLTELLQFSKTKKNELKNSQNSLASQEFLTK 741
L K +ELQ E E + + ++ + +K L+N S+E + K
Sbjct: 106 VKTLYKEKCIELQALNNSLSPAEIREKIQSIDKEIEETSSKLESLRNGTVKQISKEAMQK 165
Query: 742 LQKPSPVKSKQARKRQKI 759
K K R+K+
Sbjct: 166 TDKNYDFAKKGFSNRKKM 183
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 32.3 bits (70), Expect = 0.55
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 136 PTRPLVAQQIDACYNIVAIPPRDT--IEM-TGHMQTSTRKLHWQNKRVFFATPQVIYNDI 192
PTR L Q + + A + I + T T R L + ATP +
Sbjct: 96 PTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHV 155
Query: 193 KSGICPGDKIRCLVIDEA 210
SG+ P DK++ LVIDEA
Sbjct: 156 ASGVLPLDKLKFLVIDEA 173
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 32.3 bits (70), Expect = 0.55
Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 17/150 (11%)
Query: 856 DVDL-IDYISSKSISEYRNRAVEDRASPD---VNKTDLAEKNVSANFDL---DLEFDSQI 908
D DL ++ + S+ SE + +A + +NK + +N+DL D E D ++
Sbjct: 11 DADLELESLQSEIESESPQPVTKSKAKKNKKKLNKASAFNSDNDSNYDLKPEDDEVDEEV 70
Query: 909 FSEKSNDNEFEKDEVNRENNFDIGELHDIFANSSPLDNFEAEKTDKPQENEKKVLSFFGL 968
K ++ K + + N F+ FA+ ++ E E ++KP KK
Sbjct: 71 VPVKKKPSK--KSKKAKANAFEA------FADEQSVEEEEEEDSEKPVRKNKKSSKKASP 122
Query: 969 DSVEDIFADYEDSFDKKCDEPEMKDIEADK 998
+ D AD D D DE E + E K
Sbjct: 123 KNAFDALAD--DMDDLSLDEEESESSEKSK 150
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 32.3 bits (70), Expect = 0.55
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 503 SQPQQLRVMRAFRAGACNTLVATCVAEEGLDVGSVDLILCFDIS 546
SQ Q+ R + R + LVAT +A G+D+ +V L+L ++++
Sbjct: 551 SQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMA 594
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 31.9 bits (69), Expect = 0.73
Identities = 25/133 (18%), Positives = 61/133 (45%), Gaps = 10/133 (7%)
Query: 620 LLSKSKEPSNTTKKSKGKSELITNEQYGKLSPETISENKYFAEH-KEYWS---MDRETYL 675
L S S E +++ ++E ++ ++ ++ E + +NK + K Y+ D E Y
Sbjct: 74 LESSSDEEDGNAEENLSENEELSGKKKDAVNEEELYDNKGWGRSAKSYYGGDDYDNEDYS 133
Query: 676 KDDSNVETNLDMSKWLELQRTLQDTVNVEHSEDTVLLTELLQFS-KTKKNELKNSQNSLA 734
++D + ++ + L LQR +E +T + ++ Q++ + +K ++ A
Sbjct: 134 EEDDEFDARMEEQEALRLQRK-----RLEKVSETDAIDDISQWADNSDLKSIKQDSSAAA 188
Query: 735 SQEFLTKLQKPSP 747
+E + ++ P
Sbjct: 189 IEELVQQISPDLP 201
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 31.5 bits (68), Expect = 0.96
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Query: 99 KNTLVSLPTGLGKTFIAAVVMYNFYRWY---PLG------KIVFTAPTRPLVAQQIDACY 149
+N L+ PTG GKT +A + + N + + L KIV+ AP + LV + ++
Sbjct: 536 ENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFS 595
Query: 150 NIVAIPPRDTIEMTGHMQTSTRKLHWQNKRVFFATPQV--IYNDIKSGICPGDKIRCLVI 207
+ E+TG Q + +++ ++ TP+ I + + + +R ++I
Sbjct: 596 KRLTPYNIRVAELTGDSQLTKQQI--SETQIIVTTPEKWDIITRKANDLSYVNLVRLVII 653
Query: 208 DEAH 211
DE H
Sbjct: 654 DEVH 657
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 78 IYPTNYPVRDYQFNIINAALVKN--TLVSLPTGLGKTFIAAVVMYNFYRWYPLGKIVFTA 135
+YP Q + N+ N + P G GKT A + + + + G V+ A
Sbjct: 1358 LYPNFKFFNKIQTQVFNSVYKTNDSVFIGAPNGSGKTVCAELALLHHWSQEDYGTAVYIA 1417
Query: 136 PTRPLVAQQIDACY 149
P + +V ++ + Y
Sbjct: 1418 PIQEIVDRRYEEWY 1431
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 31.5 bits (68), Expect = 0.96
Identities = 31/146 (21%), Positives = 70/146 (47%), Gaps = 8/146 (5%)
Query: 550 PVRLVQRDGLNA-KLLQSNEIKESLYKRNPRMMPHDFTPKCQMLHI-TVAKRNETKQNNE 607
P+R + +++ ++++S IKE Y R + +P + HI + A ++TK E
Sbjct: 157 PIRPSLQSSISSNRIIKSPGIKEDDYMHRGRSIS---SPMIDVEHINSTAVPSKTKNLPE 213
Query: 608 NCKKGQKNIRSMLLSKSKE-PSNTTKKSKGKSELITNEQYGKLSPETISENKYFAEHKEY 666
K+ K S+ +K ++ P ++ + S L + + ++S + + + Y
Sbjct: 214 KPKRSHKLRNSITFAKIEDHPERKSQLRRLSSSLKCFDPEYDYNDPSLSIRRDSSTY--Y 271
Query: 667 WSMDRETYLKDDSNVETNLDMSKWLE 692
+S ETY ++DS++++ W++
Sbjct: 272 FSNVNETYDEEDSDLDSETSTVNWVQ 297
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 505 PQQLR--VMRAFRAGACNTLVATCVAEEGLDVGSVDLILCFDI 545
PQ+ R +M+ FR G L+ T + G+DV V L++ +D+
Sbjct: 295 PQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDL 337
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 31.1 bits (67), Expect = 1.3
Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 864 SSKSISEYRNRAVEDRASPDVNKTDLAEKNVSANFDLDLEFDSQIFSEKSNDNEFEKDEV 923
S +S ++ ++ + SP T++AE N+S + + + D + E ++
Sbjct: 880 SDRSPFSFKAFGIDSKKSPTPEPTEMAESNISEESEGWKLIEQPNVESEIEDQDEESSDL 939
Query: 924 NRENNFDIGELHDIFANSSPLDNFEAEKTD 953
N + ++H++ N LD EK D
Sbjct: 940 NGKRRSTPPKIHEVGVNKM-LDVVPKEKRD 968
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 978 YEDSFDKKCDEPEMKDIEADKTDDVTFLNVRSTTETHKPMPDE 1020
Y D+ K D PEM I+ DK D T VR++ + P PD+
Sbjct: 428 YADAISKSIDYPEMNVIK-DKNKDST---VRASNNENIPTPDK 466
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 30.7 bits (66), Expect = 1.7
Identities = 32/178 (17%), Positives = 78/178 (43%), Gaps = 5/178 (2%)
Query: 597 AKRNETKQNNENCKKGQKNIRSMLLSKSKEPSNTTKKSKGKSELITNEQYGKLSPETISE 656
A + KQ+++ +K+ + + S EPS + K + KS+ S + SE
Sbjct: 36 AAKEIAKQSSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSE 95
Query: 657 NKYFAEHKEYWSMDRETYLKDDSNVETNLD-MSKWLELQRTLQDTVNVEHSED----TVL 711
++ + E S + E+ + S+ E+ + + K E + + ++ + SE+ V
Sbjct: 96 SESSSSESESSSSESESSSSESSSSESEEEVIVKTEEKKESSSESSSSSESEEEEEAVVK 155
Query: 712 LTELLQFSKTKKNELKNSQNSLASQEFLTKLQKPSPVKSKQARKRQKITHSPGKKNGD 769
+ E + S +E +S++ S ++ ++ K+++ ++ + S + + D
Sbjct: 156 IEEKKESSSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSD 213
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 30.7 bits (66), Expect = 1.7
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 686 DMSKWLELQRTLQDTVNVE-HSEDTVLLTELLQFSKTKKNELKNSQNSLASQEFLTKLQK 744
+ S+W++ +D V + S D + + S KK++ K S S + KL+K
Sbjct: 138 EFSEWMQKAEEDEDRVCEDASSSDEAKREKRKKHSSKKKSKKKTSTGSALDPK---KLEK 194
Query: 745 PSPVKSKQARKRQKITHSPGKKNG 768
+ K K+ +K+ K + S +K+G
Sbjct: 195 ITKKKKKEHKKKDKESSSKKRKSG 218
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 30.3 bits (65), Expect = 2.2
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 603 KQNNENCKKGQKNIRSMLLSKSKEPSNTTKKSKGKSELITNEQYGKLSPETISENKYFAE 662
K N + KK + RS S E SN T + T E L E S NKY E
Sbjct: 954 KLNKMSFKKKKNEQRSQ--SFQVELSNLTSEYD-----TTTESIATLKTELQSLNKYVDE 1006
Query: 663 HKEYWSMDRETYLKDDSNVETNLDMSKWLELQRTLQDTVNVEHSEDTVLLTELLQFSKTK 722
HK +S+++ ++ K++E + ++V E E L +Q +T
Sbjct: 1007 HKSRLREFENALWDINSSID---ELVKFIEFESKQMNSVKAERIE----LENQIQEQRTA 1059
Query: 723 KNELKNSQN 731
+E+ N++N
Sbjct: 1060 LSEVGNNEN 1068
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 30.3 bits (65), Expect = 2.2
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 960 KKVLSFFGLDSVEDIFADYEDSFDKKCDEPEMKDIEADKTDDVTFLNVRSTTETHK 1015
KK +S F V +EDSFD K DE ++++ + T+DV+ L TE ++
Sbjct: 57 KKAISIFSSPVVNK----HEDSFDSKTDEEYLQNV-STTTEDVSMLINTPVTEKYE 107
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 30.3 bits (65), Expect = 2.2
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 8/109 (7%)
Query: 913 SNDNEFEKDEVNRENNFDIGELHDIFANSSPLDNFEAEKTDKPQENEKKVLSFFGLDSVE 972
+ + E EK+ N EN L D +PLD E DKP + + G ++E
Sbjct: 498 ATNEEVEKNNANSEN---ANGLTDEKIIEAPLDTKENSDDDKPSPAAAEDIGTNG--AIE 552
Query: 973 DIFADYEDSFDKKCDEPEMKDIEADKTDDVTFLNVRSTTETHKPMPDEN 1021
+I E +K ++ DK +D LN+ + ++ +P D+N
Sbjct: 553 EIPQVSEVLEPEKAHTTNLQLNALDKEED---LNITTVKQSSEPTADDN 598
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 503 SQPQQLRVMRAFRAGACNTLVATCVAEEGLDVGSVDLILCFDI--STRSPVRLVQRDG 558
+Q ++ V+ FR G +VAT VA G+DV + + +D +T V + R G
Sbjct: 404 AQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTG 461
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 30.3 bits (65), Expect = 2.2
Identities = 57/267 (21%), Positives = 108/267 (40%), Gaps = 23/267 (8%)
Query: 497 DGRTVVSQPQQLRVMRAFRAGACNTLVATCVAEEGLDVGSVDLILCFDIS---TRSPVRL 553
D + Q + RAFR+ A N+ + ++ GL G V+L LC I T S +
Sbjct: 493 DDKHFHEQSLATKTWRAFRS-AINSHLQN-FSDTGL--GDVEL-LCNSIEGKPTTSKITP 547
Query: 554 VQRDGLNAKLLQSNEIKESLYKR-NPRMMPHDFTPKCQMLHITVAKRNETKQNNENCKKG 612
+ +++ E+ E + KR N + +F Q +NE ++ + ++G
Sbjct: 548 SIPPAFDIHIIEGEELLEEMKKRENVKHNSQNFASPMQTDAEGDIVQNEEEKESVEVEEG 607
Query: 613 QKNIRSMLLSKSKEPSNTTKKSKGKSELITNEQYGKLSPETISENKYFAEHKEYWSMDRE 672
+ ++ L S +P ++G + E +++ SE+ +E S D
Sbjct: 608 KH--KNDLPKVSPKPP-----TEGVDSEVNGESLVQVNKVLKSEDDNTSEA----SKDPS 656
Query: 673 TYLKDDSNVETNLDMSKWLELQRTLQDTVN---VEHSEDTVLLTELLQFSKTKKNELKNS 729
+++K N+E E+ + T+N E E+ V T L S K +E
Sbjct: 657 SHVKSPENIEKLKQNDDHFEVTEEITSTINSKISEKQENNVAETILEVTSSPKSSENSQK 716
Query: 730 QNSLASQEFLTKLQKPSPVKSKQARKR 756
Q+ + + + +PS + S R +
Sbjct: 717 QSEITKKRGRDEEDEPSDLHSSPKRPK 743
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 668 SMDRETYLKDDSNVETNLDMSKWLELQRTLQDTVN--VEHSEDTVLLTELLQFSKTKKNE 725
S++++ +D S L + LE QR+L++T+N + HS+ L F K+
Sbjct: 631 SVNKKILQQDKSKSMIELRCLRLLEKQRSLRETINSVIPHSDSLAAGNLRLMFRNVKRQT 690
Query: 726 LKNSQNSLASQE 737
++ + LA E
Sbjct: 691 MQEANLVLALAE 702
>SPAC1805.05 |cki3||serine/threonine protein kinase
Cki3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 439
Score = 29.9 bits (64), Expect = 2.9
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 1237 PYFNKKPKLTKSPDKQRTLKEKILASVSSFKVKQKFDNFHCSVSQSNVLSQKENRNPQFA 1296
PY + L SP KQ + + ASV++ K V Q S + + PQ
Sbjct: 335 PYARTRQNLLSSPSKQTPVNNVVDASVATQKDGIPGKAASPQVQQQQQTSSAQQQQPQRV 394
Query: 1297 SQFA-KTTSATEKDVK 1311
Q A +TT T+ D +
Sbjct: 395 EQPAPQTTQPTQVDTQ 410
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 29.9 bits (64), Expect = 2.9
Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 6/139 (4%)
Query: 824 CENLCECKIFNGVSDKKQTSGLLINLNEINLPDVDLIDYISSKSISEYRNRAVEDRASPD 883
CEN + +F D+ I N+ NL + D +S E + + D
Sbjct: 698 CENT-DTTLFTTWGDQGFRPSDSICYNDFNLLETANSDAEASIHELELQPLNAVNEREVD 756
Query: 884 VNKTDLA-----EKNVSANFDLDLEFDSQIFSEKSNDNEFEKDEVNRENNFDIGELHDIF 938
+++TD+ + V D EF + I S SND+ F+ D++ ++ ++ +
Sbjct: 757 ISQTDMTPSTALDTRVDTRVDSLPEFSNLILSPSSNDDSFQLDDLLSPSSSNLKQQIQKV 816
Query: 939 ANSSPLDNFEAEKTDKPQE 957
+ L+ EK K E
Sbjct: 817 VPQNSLEFSVGEKEKKAAE 835
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 29.9 bits (64), Expect = 2.9
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 883 DVNKTDLAEKNVSANFD-LDLEFDSQIFSEKSNDNEFEKDEVNRENNFDIGELHDIFANS 941
D K L E N N D +D E + ++ + + + EK +++ EN H I
Sbjct: 333 DNKKFLLKEINAKLNEDDIDSELEIEVKPKTTALDNIEKSKLSEENE------HGIKGKL 386
Query: 942 SPLDNFEAEKTDKPQENEKKVLSF 965
L + K KP ENE + SF
Sbjct: 387 KQLAEIKLSKDGKPFENEFNIKSF 410
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 29.5 bits (63), Expect = 3.9
Identities = 18/84 (21%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 864 SSKSISEYRNRAVEDRASPDVNKTDLAEKNVSANFDLDLEFDS----QIFSEKSNDNEFE 919
S K + +++ A ++++ KN+S N + + F + ++ + +DN+ E
Sbjct: 91 SQKEKKQNKSKEALADAKDPLDESSNGIKNLSLNKNDEPAFQTNGEVKMKNSSESDNQPE 150
Query: 920 KDEVNRENNFDIGELHDIFANSSP 943
K ++ ++N D+ + +IF S+P
Sbjct: 151 KKKIKKQNPTDLVSVPEIFEQSNP 174
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/68 (25%), Positives = 34/68 (50%)
Query: 706 SEDTVLLTELLQFSKTKKNELKNSQNSLASQEFLTKLQKPSPVKSKQARKRQKITHSPGK 765
S+ L ++ +F +++ L ++ NS+ S++ L + VKSK + K I +
Sbjct: 99 SQRRTRLKQIQEFISHRRSFLNSNANSVESEKILAENNHMFNVKSKLSNKESFIKTRRPR 158
Query: 766 KNGDIRAL 773
NG++ L
Sbjct: 159 TNGELSDL 166
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 29.1 bits (62), Expect = 5.1
Identities = 39/192 (20%), Positives = 70/192 (36%), Gaps = 18/192 (9%)
Query: 886 KTDLAEKNVSANFDLDLEFDSQIFSEKSNDNEFEKDEV-------NRENNFDIGELHDIF 938
++D KNV+ F ++ ++ S S D+E E + E ++ EL
Sbjct: 243 QSDSGSKNVARQFSR-IKRKRKVLSSSSEDDESSSPEDLLKPIIRSTEEMENLNELEQEV 301
Query: 939 ANSSPLDNFEAEKTDKPQENEKKVL----------SFFGLDSVEDIFADYEDSFDKKCDE 988
+ P+D EK + + KK S+ L+S+ +D + + +E
Sbjct: 302 QDLDPIDEGFEEKVPRFRNPSKKAFYEKLHSLRNRSYSKLESLTSEKSDTLITKSELANE 361
Query: 989 PEMKDIEADKTDDVTFLNVRSTTETHKPMPDENPLSPSILSGRVKVKEQVTSPILCSQKR 1048
E D D D +N RS M L + + + +Q PI S
Sbjct: 362 SEEDDFIVDDEDTEVMMNARSLLPAEFSMTSHQGLKAHFRNFMMFIVQQAIDPIDASDIS 421
Query: 1049 KFELSTKKEIHR 1060
L +++ I +
Sbjct: 422 DHYLFSRRTIRK 433
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 29.1 bits (62), Expect = 5.1
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 588 KCQMLHITVAKRNETKQNNENCKKGQKNIRSMLLSKSKEPSNTTKKSKGKSELITNEQY- 646
K + T + KQ+ EN NI + L +S S +K+ E+ T++ Y
Sbjct: 109 KVSVTMATKFAEKKKKQDRENVDSKDNNITNFSLHRSFSASGKMEKNNSFKEVSTSKSYI 168
Query: 647 --GKLSPET---ISENKYFAEH 663
G L P+T +N Y E+
Sbjct: 169 SSGYLHPKTSPIFKKNGYATEN 190
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 29.1 bits (62), Expect = 5.1
Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 2/131 (1%)
Query: 860 IDYISSKSISEYRNRAVEDRASPDVNKTDLAEKNVSANFDLDLEFDSQIFSEKSNDNEFE 919
+D S KSI + N D A D + S N L DS+ +N+ +
Sbjct: 1 MDTNSPKSIDKDANSTEVDAAEQDAASVKINSTRASPNGSDLLNDDSEAAKITTNEKQSS 60
Query: 920 KDEVNRENNFDIGELHDIFANSSPLDNFEAEKTDKPQENEKKVLSFFGLDSVEDIFADYE 979
+ + E+ D N + +DN DK ++ + + D+ E+ D E
Sbjct: 61 PVDSHNESPNDTTINKGEDGNENEVDN--VNNNDKKEDEDNVEENEEEADANEEEEEDEE 118
Query: 980 DSFDKKCDEPE 990
D + + DE E
Sbjct: 119 DDEEDEEDEDE 129
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 28.7 bits (61), Expect = 6.8
Identities = 15/58 (25%), Positives = 34/58 (58%)
Query: 605 NNENCKKGQKNIRSMLLSKSKEPSNTTKKSKGKSELITNEQYGKLSPETISENKYFAE 662
N ++ ++ ++ +RS+ S ++E S K ++ + +L + EQ + PET ++N +E
Sbjct: 372 NIKDLEEEEEKLRSVEGSLNEELSEEEKPAESREQLESAEQTNGVKPETQAQNMSASE 429
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 28.7 bits (61), Expect = 6.8
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 43 VKTSNGS-LNKNDLNVSALCCDEELNGYDKLLGQTWIYPTNYPVRDYQFNIINAALVKNT 101
V ++GS +N+N +S + +DK + + W P ++ ++ + NI NA+ V N+
Sbjct: 395 VNMADGSTMNENYSIISTAAANGVYEYFDKSMKKNWAGPEHWRIQALRKNINNASTVFNS 454
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 28.7 bits (61), Expect = 6.8
Identities = 29/143 (20%), Positives = 60/143 (41%), Gaps = 12/143 (8%)
Query: 888 DLAEKNVSANFDLDLEFDSQIFSEKSNDNEFEKDEVNRENNFDIGELHDIFANSS-PLDN 946
D + +V+ N ++ DS I K++ N D + + D + D +NSS P +
Sbjct: 403 DATKSSVAHNEKVEDISDSDIPIMKTSSNSTSLDA---DRDSDTSSISDTSSNSSAPHEQ 459
Query: 947 FEAEKTDKPQENEKKVLSFFGLDSVEDIFADYEDSFDKKCDEPEMKDIEADKTDDVTFLN 1006
A + + + ++ ++ E+ +K +P +++ DD +F N
Sbjct: 460 LNATSLASTVDESSRS------PPLPEVESNKENDIKRK--QPFHDLMDSSSPDDSSFAN 511
Query: 1007 VRSTTETHKPMPDENPLSPSILS 1029
+S E KP +N +++S
Sbjct: 512 AKSDEEVQKPSVSKNIADGAVIS 534
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 28.7 bits (61), Expect = 6.8
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 458 RAIVFCEYRESVNLVHCLLLQCRPLITPQTFVGQGASGKDGRTVVSQPQQLRVMRAFRAG 517
R IVFC R++ + L+ Q + + S + G TV ++ ++ G
Sbjct: 553 RTIVFCRVRKTCESLMRLVRQELKTKQKGDLLSKIQSYRAGYTV---QERRKIESEMFNG 609
Query: 518 ACNTLVATCVAEEGLDVGSVDLIL 541
++AT E G+D+GS+D ++
Sbjct: 610 KLYGIIATNALELGIDIGSLDAVI 633
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 830 CKIFNGVSDKKQTSGLLINLNEINLPD--VDLIDYISSKS 867
CK ++G+SD K T G+L+ L ++ D + ++ Y+ + S
Sbjct: 645 CK-YDGLSDTKLTEGILLKLKDLKTVDYSISVLSYVWNNS 683
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/93 (18%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 869 SEYRNRAVEDRASPDVNKTDLA--EKNVSANFDLDLEFDSQIFSEKSNDNEFEKDEVNRE 926
+ ++ E + ++ +DL+ ++ VSA+ E +S + S+ N E D + E
Sbjct: 212 ANFQQNKYESLHAKQISASDLSLHQEFVSASIVQQPELNSLLTSQSKNSTPSESDSSSSE 271
Query: 927 NNFDIGELHDIFANSSPLDNFEAEKTDKPQENE 959
++ + + D+ + S E+ T + ++
Sbjct: 272 SSSSVSDSSDLSSTSDSSSGDESSDTARQSSSD 304
>SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 28.7 bits (61), Expect = 6.8
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 599 RNETKQNNENCKKGQKNIRSMLLSKSKEPSNTTKKSKGKSELITNEQYGKLSPETISENK 658
R+E ++ N+ KK + N ++ +KEP+ K S + +PETI E++
Sbjct: 111 RSELQEKNQKDKKKEVNKLEEKMTNAKEPNVNVPSMKASSAISVE------TPETI-ESE 163
Query: 659 YFAEHKE 665
+HKE
Sbjct: 164 ASVDHKE 170
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/39 (25%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 465 YRESVNLVHCL-LLQCRPLITPQTFVGQGASGKDGRTVV 502
+R+S+++ H L+C P+ +P ++ Q + +G+T +
Sbjct: 69 FRKSISVAHVFAFLRCNPIRSPNYYIQQAKAPFEGKTYI 107
>SPAC26H5.09c |||GFO/IDH/MocA family
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 369
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 1124 INDNEDNLCVSPILPSQTERKKLTDLAKS 1152
+N + LC P P+ E K+L DLAKS
Sbjct: 89 LNAGKHVLCEKPFTPTYGEAKELFDLAKS 117
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 28.3 bits (60), Expect = 8.9
Identities = 24/143 (16%), Positives = 61/143 (42%), Gaps = 10/143 (6%)
Query: 1223 SKRKLEMDDDEIASPYFNKKPKLTKSPDKQRTLKEKILASVSSFKVKQKFD-------NF 1275
SK+ ++++ + ++S F + + SP ++ +E L S ++K++ + N
Sbjct: 855 SKKAIQLELENLSSQAFRRNLSGSSSPSERSQSRELKLLQASEKRLKEQVEERNSLIKNI 914
Query: 1276 HCSVSQSNVLSQKENRNPQFASQFAKTTSATEKDVKGNLEFLQNYRRDPNKLQQSL---M 1332
+Q N S+ N N + + + A + + + +Q ++R +++ +
Sbjct: 915 VTRFTQLNTGSKPVNTNVEALTTISSMNQAVNMNFRELDKSIQEFKRKCQSMEREFKTEL 974
Query: 1333 NKFSTIFNNRSPEKLQSPQKRKI 1355
K + RS Q ++ K+
Sbjct: 975 RKLDGVLEARSKRLSQLEERVKL 997
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 28.3 bits (60), Expect = 8.9
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 15/134 (11%)
Query: 615 NIRSML--LSKSKEPSNTTKKSK-GKSELITNEQYGKLSPETISENKYF------AEHKE 665
N+R L L + E T +S+ K+ L+T ++ S +KYF AE +E
Sbjct: 223 NLRICLHELQLNAEKGETIDESEDSKNTLVTEDENDDSVFLESSSDKYFDSSSFDAEQEE 282
Query: 666 YWSMDRETYLKDDSNVETNLDMSKWL--ELQRTLQDTVNVEH--SEDTVLLTELL--QFS 719
+ +L +SNV+T++ S + + Q+ V+V H ++DT + L +
Sbjct: 283 KHDFPIDPFLSLESNVQTSVSQSSAVLKSINLAKQELVSVNHLVADDTKTPSPNLSSEII 342
Query: 720 KTKKNELKNSQNSL 733
+ K ++K S SL
Sbjct: 343 ENTKADIKKSIRSL 356
>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 37 DKPKLHVKTSNGSLNKNDLNVSALCCDEELNGYDKLLGQTWIYP 80
D P+LH K S + NDL A+C +LN LL T ++P
Sbjct: 43 DGPRLHCKGPACSSHSNDL---AICQHNQLNVAPHLLKWTCVWP 83
>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 28.3 bits (60), Expect = 8.9
Identities = 9/47 (19%), Positives = 24/47 (51%)
Query: 924 NRENNFDIGELHDIFANSSPLDNFEAEKTDKPQENEKKVLSFFGLDS 970
+++ + ++G+ HD + + E+ D+ K+++ F G D+
Sbjct: 161 DKDGSLEVGKSHDAMTRTKSAEEEIVEQEDEATAEMKRIMGFSGFDT 207
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.131 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,832,264
Number of Sequences: 5004
Number of extensions: 299605
Number of successful extensions: 1128
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1065
Number of HSP's gapped (non-prelim): 99
length of query: 1553
length of database: 2,362,478
effective HSP length: 82
effective length of query: 1471
effective length of database: 1,952,150
effective search space: 2871612650
effective search space used: 2871612650
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)
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