GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002427-TA|BGIBMGA002427-PA|IPR006935|Type III
restriction enzyme, res subunit, IPR001650|Helicase, C-terminal,
IPR014001|DEAD-like helicases, N-terminal, IPR014021|Helicase
superfamily 1 and 2 ATP-binding
         (1553 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       34   0.010
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    27   1.2  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    26   2.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    26   2.8  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    25   4.8  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    25   4.8  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    24   8.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 33.9 bits (74), Expect = 0.010
 Identities = 15/42 (35%), Positives = 26/42 (61%)

Query: 504 QPQQLRVMRAFRAGACNTLVATCVAEEGLDVGSVDLILCFDI 545
           Q Q+   +  F++G  + LVAT VA  GLD+ +V  ++ +D+
Sbjct: 487 QRQREEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDL 528


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
            ASP4 protein.
          Length = 136

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 1039 TSPILCSQKRKFELSTKKEIHRNSTPIAKKSL 1070
            T  ILCSQK  F+LS  K ++ +++    K L
Sbjct: 21   TVAILCSQKAGFDLSDLKSMYESNSEEQMKKL 52


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
            ASP4 protein.
          Length = 136

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 1039 TSPILCSQKRKFELSTKKEIHR-NSTPIAKKSLLFD 1073
            T  ILCSQK  F+LS  K ++  NS    KK   F+
Sbjct: 21   TVAILCSQKAGFDLSDLKSMYEANSEEQMKKFGCFE 56


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 587 PKCQMLHITVAKRNETKQNNENCKKGQKNIRSMLLSKSKEPSNTTKKSKGKSELITNEQY 646
           P   ML   +A+  +   N +     +  I+S++  KS E  +  KK++  + L+T+ +Y
Sbjct: 712 PPLSMLQ-RMAEFTKLDTNRQVNSAVKSTIQSLMKLKSPEWKDLAKKARSVNHLLTHHEY 770

Query: 647 G-KLS----PETISENKYFAEH 663
             +LS     E I EN+    H
Sbjct: 771 DYELSRGYIDEKILENQNIITH 792


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 296 KQRYVEILDCYARRLKQLNILPQNLGNLS 324
           +QRY  ++DC+ R  K+   L    GNL+
Sbjct: 50  EQRYKGMIDCFVRIPKEQGFLSYWRGNLA 78


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 296 KQRYVEILDCYARRLKQLNILPQNLGNLS 324
           +QRY  ++DC+ R  K+   L    GNL+
Sbjct: 50  EQRYKGMIDCFVRIPKEQGFLSYWRGNLA 78


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
            determiner protein.
          Length = 425

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 13/79 (16%), Positives = 39/79 (49%)

Query: 1214 QDKFSVQIDSKRKLEMDDDEIASPYFNKKPKLTKSPDKQRTLKEKILASVSSFKVKQKFD 1273
            ++++S   + ++K   ++ E        K +     +++R+ + KI++S+S+      ++
Sbjct: 269  RERYSRSREREQKSYKNEREYRKYGETSKERSRDRTERERSKEPKIISSLSNNYKYSNYN 328

Query: 1274 NFHCSVSQSNVLSQKENRN 1292
            N++ + +  N  +   N N
Sbjct: 329  NYNNNYNNYNNYNNNYNNN 347


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.131    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 410,714
Number of Sequences: 429
Number of extensions: 17376
Number of successful extensions: 32
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 10
length of query: 1553
length of database: 140,377
effective HSP length: 67
effective length of query: 1486
effective length of database: 111,634
effective search space: 165888124
effective search space used: 165888124
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)