GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002426-TA|BGIBMGA002426-PA|IPR001382|Glycoside
hydrolase, family 47
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al...   254   3e-68
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...   136   6e-33
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    32   0.18 
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    31   0.54 
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    30   0.71 
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    28   2.9  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    27   5.0  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    27   5.0  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   8.7  

>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
           1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score =  254 bits (621), Expect = 3e-68
 Identities = 170/484 (35%), Positives = 251/484 (51%), Gaps = 29/484 (5%)

Query: 66  QSSVEKQRHIIEMMRHAWNNYKLYAWGKNELNPISKRAHLSSVFGSGEMGATIVDGLDTL 125
           + S  ++  I +    +W +Y+ Y WGK+E  PI KR    +    G MG  I+D LDT+
Sbjct: 41  KGSTRRKALIKKTFIESWTDYETYGWGKDEYYPIIKRGR--NYLRKG-MGWMIIDSLDTM 97

Query: 126 YVMGLTDEFREGRDWIAEHFNINEIDSELSVFETTIRFVGGLLSCYALTGDTIFRDKAAE 185
            +MGL ++    R+W+      N+ D E+SVFETTIR +GGLLS Y L+ D ++ D+A +
Sbjct: 98  MIMGLDEQVLRAREWVNNSLTWNQDDEEVSVFETTIRILGGLLSSYHLSQDKLYLDRAVD 157

Query: 186 VADALLPAFETPTGLPYALINPSTKASRQYHWADSNSILSELGTLHLEFSYLSDVTGREV 245
           +AD LL A+ T TGLP + +N  T+ SR+    +     +E GT+ +E  YLS +TG   
Sbjct: 158 LADRLLAAYNTSTGLPRSNVNLGTRKSRK-RTREYFVSTAESGTVQMELRYLSYLTGDPK 216

Query: 246 YKNKVDKIREVLY---TIEKPGDLYPNYINPRTGQWGQRHISLGALGDSFYEYLLKAWLA 302
           Y    DK  EVL    T    G L P  +N  TG +  R+I LG+ GDS+YEYLLK  L 
Sbjct: 217 YWITADKTMEVLLGDATWSHTG-LVPITVNLITGAYVGRNIRLGSHGDSYYEYLLKQDLQ 275

Query: 303 SNRGDEQARTMFDTAMQAALDKMLR-VSPSGLAYLAELKYGWVIEE--KMEHLSCFAGGM 359
                   R  FD ++   ++ +L   +P+  AY+AEL  G    +  KM+HL CF  G 
Sbjct: 276 LFSSGTVYRKAFDLSVDGIIEYLLNYTTPNHFAYIAELPGGLEHAQLPKMDHLVCFLPGT 335

Query: 360 F---ALAATTLE--------NSFSERYMDVARKLTHTCHESYFRSETKLGPEA--FRFSN 406
               A   T+LE         +  ER + +A++L  TC+E Y  + T L PE   F    
Sbjct: 336 LMWGATNGTSLEAARTSKNWGTRQERDVKLAQELMRTCYEMYNMTATGLAPEIVFFDVDQ 395

Query: 407 AVEARAQKSDEKVYLLRPETFESYFIMWRLTKEQKYRDWGWEAVQALEKHCRVEG--GYT 464
                  K  ++  L+RPET ES FI++R+T+++ YR+WGW    +  ++ R+ G   +T
Sbjct: 396 TKNEIYSKRRDQHNLMRPETVESLFILYRITRDEIYREWGWNIFVSFLRYSRLPGRDAFT 455

Query: 465 GLTNVYHQNPQGD-DVQQSYFLAETXXXXXXXXXXXXXXX-XXEWVFNTEAHPLP-IKGK 521
            L +V  +  +   D  +S++ AET                   + FNTEAHP P I+  
Sbjct: 456 CLDSVESKKVKDQRDKTESFWFAETLKYLYLLFEDDFSILPLTNYTFNTEAHPFPNIENN 515

Query: 522 NPLY 525
             LY
Sbjct: 516 MDLY 519


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score =  136 bits (330), Expect = 6e-33
 Identities = 134/496 (27%), Positives = 222/496 (44%), Gaps = 61/496 (12%)

Query: 57  SSYSGALDSQSSVEKQRHIIEMMRHAWNNYKLYAWGKNELNPISKRAHLSSVFGSGEMGA 116
           +S  GA++S   VE +     +  H +NNY  +A+  +EL P+S             +G 
Sbjct: 21  NSIVGAINSARMVELRETSRRLFYHGYNNYMQFAFPNDELAPLSCEGLGPDYENPNNIGV 80

Query: 117 ---------TIVDGLDTLYVMGLTDEFREGRDWIAEHFNINEIDSELSVFETTIRFVGGL 167
                    T+VD LDTL V+G  + F++  D +  H N  E D+++ VFE TIR +GGL
Sbjct: 81  NDVRGDYLLTLVDVLDTLVVLGDREGFQDAVDKVIHHINF-ERDTKVQVFEATIRILGGL 139

Query: 168 LSCYALTGDT-------IFRDK----AAEVADALLPAFETPTGLPYALINPSTKASRQYH 216
           LS +    +        +++ +    A E+A+ LLPAF TPTG+P+A IN     +  Y 
Sbjct: 140 LSSHIFASEEKYGFQIPLYKGELLTLATELAERLLPAFRTPTGIPFARINLMKGVA--YR 197

Query: 217 WADSNSILSELGTLHLEFSYLSDVTGREVYKNKVDKIREVLYTIEKPGDLYPNYINPRTG 276
               N   +   +L LEFS L+ +TG   +K   +     ++       L  N I+  +G
Sbjct: 198 EVTEN-CAAAASSLVLEFSMLTALTGNNKFKASAENAFFSVWKRRSGIGLLGNSIDVLSG 256

Query: 277 QWGQRHISLGALGDSFYEYLLKAWLASNRGDEQARTMFDTAMQAALDKMLRVSPSGLAYL 336
           +W      +GA  DSFYEY  K+++    GD +    +    Q +L+ +   + S   Y 
Sbjct: 257 RWIYPVSGVGAGIDSFYEYAFKSYIF--LGDPR----YLEVWQKSLESLRHYTASLNEYY 310

Query: 337 AELKY---GWVIEEKMEHLSCFAGGMFALAATTLENSFSERYMDVARKLTHTCHESYFRS 393
            +  Y   G V+   ++ LS +  G+  LA            +++A+K+    H  YF  
Sbjct: 311 YQNVYSANGMVMSRWVDSLSAYFPGLLVLAGE----------LELAKKM----HLYYFSI 356

Query: 394 ETKLG--PEAFR-FSNAVEARAQKSDEKVYLLRPETFESYFIMWRLTKEQKYRDWGWEAV 450
             K G  PE +  ++ ++E          Y LRPE  ES + ++R TK+  Y   G   +
Sbjct: 357 YLKFGQLPERYNLYTKSIELNG-------YPLRPEFAESTYYLYRATKDVFYLHVGELLL 409

Query: 451 QALEKHCRVEGGYTGLTNVYHQNPQGDDVQQSYFLAETXXXXXXXXXXX--XXXXXXEWV 508
             +E H     G+  + N+  +     +  +S+FL+ET                   +++
Sbjct: 410 SNIENHLWTPCGFAAVENL--EKYTLSNRMESFFLSETLKYLFLLFDDDNPIHRSHHDFI 467

Query: 509 FNTEAHPLPIKGKNPL 524
           F TE H  P+  +  L
Sbjct: 468 FTTEGHLFPVTNQTRL 483


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 288 LGDSFYEYLLKAWLASNRGDEQARTMFDTAMQAALDKMLRVSPSGLAYLAELKYGWVIEE 347
           +G+     +L + L   R     R+    A +  ++K++ ++P  +  L EL     +EE
Sbjct: 232 IGNPEIRMMLDSGLRDWRKQRSGRSSSHVASKG-INKVVNINPGDVKSLIELFPQLSVEE 290

Query: 348 KMEHLSCFAGGMFALAATTLENSFSE 373
            +EHLS   G + A   + + +S  E
Sbjct: 291 AVEHLSASLGNIDAACESVITSSLPE 316


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 6/86 (6%)

Query: 203 ALINPSTKASRQYH--WADSNSILSELGTLHLEFSYLSDVTGREVYKNKVDKIREVLYTI 260
           +L N  T A  +Y   +A+  SI  +L     E SYLSD++     + K+  I++   TI
Sbjct: 906 SLENQVTIADEKYEFLYAEKQSIEEDLANKQTEISYLSDLS--STLEKKLSSIKKDEQTI 963

Query: 261 -EKPGDLYPNYINPRTG-QWGQRHIS 284
             K  +L  +Y+N     Q   +H+S
Sbjct: 964 SSKYKELEKDYLNIMADYQHSSQHLS 989


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)

Query: 132 DEFREGRDWIAEHF--NINEIDSEL-SVFETTIRFV 164
           DEFRE   WI ++   N  +ID+EL   F+T +R+V
Sbjct: 287 DEFREQVAWIIDYLLKNRRDIDAELYEPFQTAVRYV 322


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 401 AFRFSNAVEARAQKSDEKVYLLR----PETFESYFIMWRLTKEQKYRD 444
           A+    + E       E VYLLR    P+T  S FI W  T++  + D
Sbjct: 122 AYDSVGSFEEHVHSISENVYLLREFDIPKTVYSLFIEWNRTRKHSFLD 169


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 482

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 28 GQGTSVHPASRLAREARSLQSNQIEAGNSSSYSGALDSQSSVEKQRHIIEMMRHAWNNYK 87
          G     HP++ +AR   SL S++    N      A  S ++V K+RH ++ + +  N   
Sbjct: 17 GNNDENHPSNHIARAKSSLHSSENSLVNGKK---ATVSSTNVPKKRHALDDVSNFHNKEG 73

Query: 88 LYAWGKN 94
          +    KN
Sbjct: 74 VPLASKN 80


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 9/37 (24%), Positives = 20/37 (54%)

Query: 59 YSGALDSQSSVEKQRHIIEMMRHAWNNYKLYAWGKNE 95
          Y G +  ++ V++++ +   +R  WN  + Y   K+E
Sbjct: 18 YRGYVSQENKVKRRKRLFNAIRKLWNERRRYRMPKDE 54


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 176 DTIF-RDKAAEVADALLPAFETPTGLPYALINPSTKASRQYHWADSNSILS 225
           D++F +  AA+    ++P+  TP G P    +P+       H A S +  S
Sbjct: 233 DSLFGKRSAAQAMATVVPSVSTPGGTPPRFASPALTVESMVHAAPSTTTSS 283


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.132    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,398,799
Number of Sequences: 5004
Number of extensions: 97652
Number of successful extensions: 261
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 9
length of query: 539
length of database: 2,362,478
effective HSP length: 76
effective length of query: 463
effective length of database: 1,982,174
effective search space: 917746562
effective search space used: 917746562
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)